Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10924 ATGTGGAACTGTATCAACCGAAGAATTGCCAGAAGATTTTTATCCACTACTGTGAGTACACGTGGCTGGTGGGACCATGTGAGACCCGCACCAAAGGACCCCATTGTTAGTGTCACTGAGGCCTTTCACGCTGACCCTTTTCCTCACAAGATCAATCTTGGAATGGGAACTTACAGGGATGATGACGGCAAACCCTTCATTCCTCAATGCGTTCGTGATGCAGAAGCAATGATTCAGAGATGTAAATTCGAGGAATCAAGCTCTTCTGCAATCCGTTCAAAATTTGTTCAGGAGAGTGTAAAGTTAGCATATGGGAATGATTCATATGTTGTTAGAGAAGGATTGTTTGCTGGAGTACCAACTTTGTCTGGAACTGGTGCATGTCGACTTTTTGCTGAATTTCAGAGGCATTTCTATCCTAATTCTCAAATTTATCTGCCAGATCCTACCTGGTCAAATCATCACAACATATGGGAACAGGCTGAAATTCCAGTCAAAACCTTCCACTACTACCATCCAGATACAAAGGGTTTAGATTTTGCTGCGCTCATAAATGATATCAAGAATGCACCAGATTGTTCTTTCTTCTTGCTTCATCCATGCGCCCACAACCCAACTGGTGTTGACCCCACTGAGGAACAATGGAGAGAGATATCATACCACCTCAAGGTTAAAAATCATTTTCCATTCTTTGACATGGCTTATCAAGGTTTTTCAAGTGGGGATCTTGACAAGGATGCCGCAGCACTTAGAATTTTCCTTGAAGATGGGCATTTGATAGGTTGTGCTCAGTCATTTGCAAAGAATATGGGATTATTTGAGCATAAAGTTGGTTGTCTTAGTGTTTTGTGCCAGAATATGAAGCAAGCAGCTGCAATGAAAAGCCAACTGCAGCAGATTGCCCATGCAATGTATAGCAGTCTTCCTTTTCAGGGTATTTTACTGGCTACTGTGATATTAAGCAACCCAGAAATGAAAGCACTTTGGAGAAAAGAGATAAAGGTTATGGCTGAACGGATTCAAACAATGCGAACTACTCTGCGACATTGTCTTGAGAACTTGGATTCATGTTTCAATTGGGAGCATATAACTTCCCAGGTTGGCATGTTCTGCTTTTCTGGGTTAACCCCTGATCAGGTTAAACACCTGGAGAAGCTGTTTCATATATACATGACTCCTGATGGGAGAATAAGCATGGCAGGTGTGACGACAAGCAATGTGAATTATTTGGCAAATGCAATACATCAGGTGACCAGAATCGATGAGGAAGTCTTAAGGTCATGTAATGAACAATAA 1296 0.4182 MWNCINRRIARRFLSTTVSTRGWWDHVRPAPKDPIVSVTEAFHADPFPHKINLGMGTYRDDDGKPFIPQCVRDAEAMIQRCKFEESSSSAIRSKFVQESVKLAYGNDSYVVREGLFAGVPTLSGTGACRLFAEFQRHFYPNSQIYLPDPTWSNHHNIWEQAEIPVKTFHYYHPDTKGLDFAALINDIKNAPDCSFFLLHPCAHNPTGVDPTEEQWREISYHLKVKNHFPFFDMAYQGFSSGDLDKDAAALRIFLEDGHLIGCAQSFAKNMGLFEHKVGCLSVLCQNMKQAAAMKSQLQQIAHAMYSSLPFQGILLATVILSNPEMKALWRKEIKVMAERIQTMRTTLRHCLENLDSCFNWEHITSQVGMFCFSGLTPDQVKHLEKLFHIYMTPDGRISMAGVTTSNVNYLANAIHQVTRIDEEVLRSCNEQ. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10924 431 CDD AAT_like 119 416 - -
Seca4g10924 431 FunFam Aspartate aminotransferase 314 414 - -
Seca4g10924 431 Gene3D Aspartate Aminotransferase, domain 1 27 414 IPR015422 GO:0003824
Seca4g10924 431 PANTHER ASPARTATE AMINOTRANSFERASE 19 418 IPR000796 GO:0006520|GO:0008483
Seca4g10924 431 Pfam Aminotransferase class I and II 49 414 IPR004839 GO:0009058|GO:0030170
Seca4g10924 431 Gene3D - 81 322 IPR015421 GO:0003824
Seca4g10924 431 FunFam Aspartate aminotransferase 82 322 - -
Seca4g10924 431 PRINTS Aspartate aminotransferase signature 227 239 IPR000796 GO:0006520|GO:0008483
Seca4g10924 431 PRINTS Aspartate aminotransferase signature 295 320 IPR000796 GO:0006520|GO:0008483
Seca4g10924 431 PRINTS Aspartate aminotransferase signature 196 215 IPR000796 GO:0006520|GO:0008483
Seca4g10924 431 PRINTS Aspartate aminotransferase signature 363 381 IPR000796 GO:0006520|GO:0008483
Seca4g10924 431 SUPERFAMILY PLP-dependent transferases 23 419 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10924 Seca-Chr4 246871057 246874081 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10924 K14455 - gmx:100814593 778.859