Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10769 ATGGCCGTCGTTGGCGTCCTCGCGTTACAAGGATCCTTCAATGAGCACATAGCCGCTCTCAGGAGGTTAGGGGTGAAAGGTGTGGAGATTCGGAAGCCGGAGCAGCTTCTCACCGTGAATTCCCTCATCATCCCTGGTGGAGAGAGCACCACCATGGCTAAGCTCGCTGAGTACCACAACCTGTTTCCTGCGTTGCGGGAGTTTGTACAAATGGGAAAGCCTGTTTGGGGAACCTGTGCGGGGCTTATATTCTTGGCAAATAAAGCTACAGGACAGAAGTCTGGTGGACAAGAACTGGTTGGTGGACTTGATTGTACTGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAGGCAGAGCTTTCAGTGCCAGAGCTCACATCTAAGGAGGGTGGTCCTGAAACATTTCGTGGAGTTTTTATTCGTGCCCCAGCAATTCTTGAAGTAGGGCCAGAAGTTCAAGTGCTGGCTGCGTATCCAGTACCTTCTAACAGATTGTCGAGCCCTGATTCCTCTATTGATGACAAAAAGGAGAATGCTGAGGAAGAAAGTAAGGTTATAGTTGCTGTGAGACAAGGGAACATACTGGCAACTGCCTTTCACCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCTTAAAGATGGCAAATGTGATTGGGGAAGAGGCCTCAAGTAGCCTTGTTCCAGTACAAGTCAGTACAAGTTATATCCAACAGCCACGGATTGATCTTCCTATCTTTCAATAG 759 0.4769 MAVVGVLALQGSFNEHIAALRRLGVKGVEIRKPEQLLTVNSLIIPGGESTTMAKLAEYHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKSGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPELTSKEGGPETFRGVFIRAPAILEVGPEVQVLAAYPVPSNRLSSPDSSIDDKKENAEEESKVIVAVRQGNILATAFHPELTADTRWHSYFLKMANVIGEEASSSLVPVQVSTSYIQQPRIDLPIFQ. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10769 252 PIRSF Glut_amidoT_SNO 1 223 IPR002161 GO:0004359|GO:0042819|GO:0042823
Seca4g10769 252 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 1 221 IPR002161 GO:0004359|GO:0042819|GO:0042823
Seca4g10769 252 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
Seca4g10769 252 CDD GATase1_PB 4 217 IPR002161 GO:0004359|GO:0042819|GO:0042823
Seca4g10769 252 SUPERFAMILY Class I glutamine amidotransferase-like 3 219 IPR029062 -
Seca4g10769 252 FunFam Predicted protein 1 230 - -
Seca4g10769 252 Gene3D - 1 229 IPR029062 -
Seca4g10769 252 NCBIfam pyridoxal 5'-phosphate synthase glutaminase subunit PdxT 4 161 IPR002161 GO:0004359|GO:0042819|GO:0042823
Seca4g10769 252 ProSiteProfiles PdxT/SNO family profile. 3 221 IPR002161 GO:0004359|GO:0042819|GO:0042823
Seca4g10769 252 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 229 - -
Seca4g10769 252 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
Seca4g10769 252 Pfam SNO glutamine amidotransferase family 6 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10769 Seca-Chr4 244851749 244857068 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10769 K08681 - gmx:100786227 440.269