Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10373 ATGTCTGGTCACTGGGGAATTCTTGTTTCAGATCCATGGCTTCAGAATCAGTTCACCCAAGTGGAGCTTCGCAGCTTAAAATCCCATTTCATGAGCATGAGGAGGGAGAGTGGGAGGCTTGTGATTGCGGATTTGTCTTCCAAGATGTCGAGGTTGAAGGTTGTGGGAGAAAATCTGAGTGAGGAAGAGAGAGGTTCTTATCTCCAGGATTTGTATCAGAACACAGATGAGGAGGTTGATTTTGAATTGTTTCTTAAGGTTTACTTGAAACTACAAACATTTGCAAGTTCTAGAACAGGAAGTAGTCTAAAGAACTCCTCAGCATTCCTAAAGGCAGCTACAACCACATTGCTTCACACAATAAGTGAATCTGAGAAAGCATCATATGTTGCACATATAAATCACTATCTTGCACAAGATGAGTTCCTCAAGAAGTACCTTCCTATTGATCCATCAACCAATGAGCTCTTTGAAATTGCAAAAGATGGCAATTTTATTTTAAGAAGATTTGCATGTTGTTGCAGCAAGCTTATCAATGTGGCAGTTCCAGGGACCATTGATGAACGGGCAATCAATACAAAAAGATTGCTCAATCCATGGGAAAGGAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACAGTAGTCAACATTGGCACTCAAGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGGGTGATTTCACAGATTATTAAGATACAATTATTGGCAGACCTCAACCTAAAGAAAACCCCTCAGCTGCTCGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTACCACCAGAAAAGATCTTGTTAAGGTGGATGAATTTCCATTTGAGGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCACATCTTCTAAATGTACTTGCACCTGAATACACTAATCCCTCTACACTGGCCGTTAAAAACCCCTTTGAAAGAGCAAAGTTAGTTCTTGAACATGCTGACAAGATGGGTTGCAAGCGATACTTAACTGCAAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCTTTTGTTGCACATATTTTCCAGCACAGGAATGGACTTTCAACTCAGACAAAACAGATTTCTCTCCTTGAAACATTGCCAGATGACACCCAAGACTCTAGAGAAGAGAGAGCATTTCGCCTTTGGATTAATAGCCTTGGAAATTCAACATATATCAACAATGTTTTTGAGGATCTCAGAAACGGGTGGGTTCTTTTAGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAACTGGAAAATTGCTAACAAGCCTCCAATTAAGATGCCATTTAAGAAAGTAGAGAACTGCAACCAAGTTGTTAAACTAGGGAAACAACTTAAGTTTTCCTTGGTAAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAGCTTATTTGTGGCAACTGATGAGATACAACATCCTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAGGAAATAACAGATGCTGATATTTTAGAATGGGCCAACAGCAAAGTTAGCAGCACAGGAAGTCAAAGCCGCATGGATAGCTTTAAGGACAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTCCTTAGTTCTGTGCAGCCAAGAGCTGTAAATTGGGGACTCATAACAAAAGGAATAACCGATGAAGAGAAAAAGATGAATGCTACCTACATTATTAGCATTGCAAGAAAGCTTGGATGTTCTATCTTCCTGCTTCCTGAAGACATCACTGAGGTGAATCAAAAGATGATCCTTACACTTACAGCTAGTATAATGTTTTGGTTCCTGAAACACCCTCATGAAGAAAGGACAGTGGGAGCTTCTGATAGTGAGAGTGGAAGTCAATTGGAGACTACATCAAATTCAACACTAGATGACTCTGCTTCTGATTCATCCGTAGATGAGAATGGAAACATGTAA 2022 0.3991 MSGHWGILVSDPWLQNQFTQVELRSLKSHFMSMRRESGRLVIADLSSKMSRLKVVGENLSEEERGSYLQDLYQNTDEEVDFELFLKVYLKLQTFASSRTGSSLKNSSAFLKAATTTLLHTISESEKASYVAHINHYLAQDEFLKKYLPIDPSTNELFEIAKDGNFILRRFACCCSKLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLRKAGYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLSTQTKQISLLETLPDDTQDSREERAFRLWINSLGNSTYINNVFEDLRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKLGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSHGKEITDADILEWANSKVSSTGSQSRMDSFKDKSLSDGIFFLELLSSVQPRAVNWGLITKGITDEEKKMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMFWFLKHPHEERTVGASDSESGSQLETTSNSTLDDSASDSSVDENGNM. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10373 673 ProSiteProfiles Calponin homology (CH) domain profile. 522 630 IPR001715 GO:0005515
Seca4g10373 673 Gene3D - 515 627 IPR036872 -
Seca4g10373 673 Gene3D - 397 514 IPR036872 -
Seca4g10373 673 FunFam Fimbrin-2 like 119 253 - -
Seca4g10373 673 CDD CH_AtFIM_like_rpt3 399 512 - -
Seca4g10373 673 ProSiteProfiles Calponin homology (CH) domain profile. 401 507 IPR001715 GO:0005515
Seca4g10373 673 CDD CH_AtFIM_like_rpt2 268 376 - -
Seca4g10373 673 Gene3D - 119 253 IPR036872 -
Seca4g10373 673 PANTHER FIMBRIN/PLASTIN 4 632 IPR039959 GO:0051015|GO:0051017
Seca4g10373 673 MobiDBLite consensus disorder prediction 642 673 - -
Seca4g10373 673 MobiDBLite consensus disorder prediction 639 673 - -
Seca4g10373 673 ProSitePatterns Actinin-type actin-binding domain signature 1. 403 412 IPR001589 -
Seca4g10373 673 FunFam Fimbrin-2 like 397 514 - -
Seca4g10373 673 Gene3D - 254 382 IPR036872 -
Seca4g10373 673 ProSiteProfiles Calponin homology (CH) domain profile. 123 248 IPR001715 GO:0005515
Seca4g10373 673 FunFam Fimbrin-1 isoform A 515 627 - -
Seca4g10373 673 ProSiteProfiles Calponin homology (CH) domain profile. 276 379 IPR001715 GO:0005515
Seca4g10373 673 SUPERFAMILY Calponin-homology domain, CH-domain 121 626 IPR036872 -
Seca4g10373 673 FunFam Fimbrin-2 isoform A 254 382 - -
Seca4g10373 673 SMART ch_5 524 628 IPR001715 GO:0005515
Seca4g10373 673 SMART ch_5 278 377 IPR001715 GO:0005515
Seca4g10373 673 SMART ch_5 125 246 IPR001715 GO:0005515
Seca4g10373 673 SMART ch_5 403 505 IPR001715 GO:0005515
Seca4g10373 673 Pfam Calponin homology (CH) domain 277 378 IPR001715 GO:0005515
Seca4g10373 673 Pfam Calponin homology (CH) domain 176 245 IPR001715 GO:0005515
Seca4g10373 673 Pfam Calponin homology (CH) domain 403 506 IPR001715 GO:0005515
Seca4g10373 673 Pfam Calponin homology (CH) domain 525 627 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10373 Seca-Chr4 239264565 239271016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10373 1 632 EF-hand Containing Proteins AT5G55400 64.353 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10373 - K17275 gmx:100799696 1240.71