Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10332 ATGAAGAGTGGAGGGAAGAAGAAGACCTCAGAAGCGTCGAACGATGCTTCTGCCATCGATTTTGTTGCTGCTGATGCTGTAGATGGAGGTGGAGGGTATGGAGATGGTGCTGGTGGCGGCAAAGATGCTTCCTTTTCTGAAAAGGAGGATACCCAGTTGCAGAAAGGGGAACTTGAGGAACCCCATATGGAAGATTCGGAAGAAGAGGCTGCAGATGAAGAAGAAGGAGAAGATGGAGAAGAAGAGGAAGATGGGTTTGCTATGCCTCAAATGGGACAAGGTCCCATTCTCGGTGAGGGCTACTATGAAGTCGAAGCTATACGTCGTAAGAGGATCCGCAAGGGTCAAGTGCAGTACTTTATCAAATGGCGTGGATGGCCTGAGGCAGCCAACACTTGGGAGCCTCCAGAAAATTTATCCGGTGTTCCTGATGTTGTGGAAGCTTTTGAGGAGAGCTTGAGATCAGGAAAGCCTCGTAAGCGCAGACGCAAGCATGTGGTTCATCACACTCAACCTAAGAAGAGGCTGGAGCGTTCTGCCACTCCTTATAGCCTTAGACAATTTCCAACTGGCACAGCTGACAGCCATACACAGTCTGCCCCTCTCAATGATCCTAGTCTTCCTGATATTCCTGCCTTTCCTCAGACAGTGCTTTTTGCTGATGAAGTGGAAAACAATGGTGATGCCAGCAGTCTTGGGAAAGCCAAACAATCTAATGATAGTAGGTCTGTGAATGCTTCAGAAGTTATCCAAAGGAATGAGGAAATTGATTATGATCCTAAGCTCAGTGAACTCAAAGCCACAACATCAAATGGTTATGATGCAGACAAGCTCGCAATACAGTTTCAAGAAGCTAAGCTTTTATCAGGAAATCGTCAAATGGATGGTCAATTAAAGGGGGTTAGTGCAGAACCAGTTCAAAGTGGCCGCTGCAGAGGAGCCAAAAGGAGAAAATCTGGTTCTGTGAAGAGGTTCAAGAAAGAGTCATACTCTGGTGAGCCTGTTAATATACAAAGACCAAATGGCATGCCTGTCGGTACAACTGATCCAGCACAAACAGGGGTTTCTGATAATATGGGTTTTAATGGTCACAAGAAGACGGATCATGCTAGACCTGCCTGCAATATTGTCAAGATTGTAAAGCCAGTAGGCTATGCAGCTGGAGTAGCCAGCAGCATGCAGGATGTTTTAGTGACCTTCATGGCTATGAGGTCCAACCATCAGTACCAAACTGATGCCAGTTGCTAG 1248 0.4655 MKSGGKKKTSEASNDASAIDFVAADAVDGGGGYGDGAGGGKDASFSEKEDTQLQKGELEEPHMEDSEEEAADEEEGEDGEEEEDGFAMPQMGQGPILGEGYYEVEAIRRKRIRKGQVQYFIKWRGWPEAANTWEPPENLSGVPDVVEAFEESLRSGKPRKRRRKHVVHHTQPKKRLERSATPYSLRQFPTGTADSHTQSAPLNDPSLPDIPAFPQTVLFADEVENNGDASSLGKAKQSNDSRSVNASEVIQRNEEIDYDPKLSELKATTSNGYDADKLAIQFQEAKLLSGNRQMDGQLKGVSAEPVQSGRCRGAKRRKSGSVKRFKKESYSGEPVNIQRPNGMPVGTTDPAQTGVSDNMGFNGHKKTDHARPACNIVKIVKPVGYAAGVASSMQDVLVTFMAMRSNHQYQTDASC. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10332 415 CDD CD_CSD 102 151 - -
Seca4g10332 415 MobiDBLite consensus disorder prediction 42 61 - -
Seca4g10332 415 Gene3D - 54 157 - -
Seca4g10332 415 MobiDBLite consensus disorder prediction 227 252 - -
Seca4g10332 415 SUPERFAMILY Chromo domain-like 93 160 IPR016197 -
Seca4g10332 415 MobiDBLite consensus disorder prediction 62 85 - -
Seca4g10332 415 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 151 IPR023780 -
Seca4g10332 415 MobiDBLite consensus disorder prediction 26 96 - -
Seca4g10332 415 MobiDBLite consensus disorder prediction 230 250 - -
Seca4g10332 415 Coils Coil 63 83 - -
Seca4g10332 415 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 406 IPR044251 GO:0006325|GO:0031507
Seca4g10332 415 MobiDBLite consensus disorder prediction 152 211 - -
Seca4g10332 415 ProSiteProfiles Chromo and chromo shadow domain profile. 102 161 IPR000953 -
Seca4g10332 415 SMART chromo_7 101 154 IPR000953 -
Seca4g10332 415 PRINTS Chromodomain signature 99 107 IPR017984 -
Seca4g10332 415 PRINTS Chromodomain signature 112 126 IPR017984 -
Seca4g10332 415 PRINTS Chromodomain signature 127 139 IPR017984 -
Seca4g10332 415 MobiDBLite consensus disorder prediction 157 172 - -
Seca4g10332 415 MobiDBLite consensus disorder prediction 183 204 - -
Seca4g10332 415 ProSitePatterns Chromo domain signature. 119 139 IPR023779 -
Seca4g10332 415 MobiDBLite consensus disorder prediction 298 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10332 Seca-Chr4 238865847 238869288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10332 - - aprc:113849713 519.235