Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10322 ATGGCGTTACAGTTTCTGAAGCACCCCGTAACCATCTCACGTGGTTTGCAGAGGGAGACAACCTTCACTTTCCTTTATCATTTACGGAATCTGAAGCTCCCACGCACAGTGAGATGGGTCAATGCTCAAAGTCCAACTTCCTTTAGGGGCTATGCTACTGCAAAATCAGAAAAGATTTTACCAGTGAAGAAGAAAAGGAGGCTGGATGAAATATGTCTTGAAAAATATCAGCAATATAGTAGATCCATCATCCAGTCATGGATTTTGCAAGGCAAAGTATATGTGAATGGGAAGGTGATAAATAAAGCTGGTACCCCTGTGTCTGAAAAAGCTGTTGTGGAGATAATTGCTGAAGTTCCGAAATATGTATGTAGAGCTGGACATAAGTTGGAAGCTGCCATTGAACAGCTTGGTGTTGATGTTGCTGGTAAAGTTGCTCTTGATTCTGGGCTATCAACTGGAGGATTCACTGACTGCTTACTTCAGTATGGTGCATCACATGTTTATGGAGTTGATGTAGGTTATGGACAGGTAGTTGACAAAATTCGAAGAGATGAACGTGTATCTGTGATAGAGCGGACAAATTTAAGATATCTTTCTGCACTCCCACAAAATGTTGATTTGGTGACTTTAGATCTCTCATTCATCTCTATTCTTCTGGTCATGCCTGCTGTGGTCAATGTCATGAAGGAAGATGCAGCATTAGTAACCTTGGTTAAACCACAATTTGAAGCACAACGATCTCAAGTAGGAAAGGGGGGGATAGTGAAAGATCCCATTGTCCATCAAGAGGTGGGTGATTTTTGGCTATCTGATCTGCTTGTTTATTCTCAACATTGTTCAAAATTTAATTAG 855 0.4094 MALQFLKHPVTISRGLQRETTFTFLYHLRNLKLPRTVRWVNAQSPTSFRGYATAKSEKILPVKKKRRLDEICLEKYQQYSRSIIQSWILQGKVYVNGKVINKAGTPVSEKAVVEIIAEVPKYVCRAGHKLEAAIEQLGVDVAGKVALDSGLSTGGFTDCLLQYGASHVYGVDVGYGQVVDKIRRDERVSVIERTNLRYLSALPQNVDLVTLDLSFISILLVMPAVVNVMKEDAALVTLVKPQFEAQRSQVGKGGIVKDPIVHQEVGDFWLSDLLVYSQHCSKFN. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10322 284 Gene3D - 55 116 IPR036986 GO:0003723
Seca4g10322 284 SUPERFAMILY Alpha-L RNA-binding motif 60 118 - -
Seca4g10322 284 Gene3D Vaccinia Virus protein VP39 117 274 IPR029063 -
Seca4g10322 284 NCBIfam TlyA family rRNA (cytidine-2'-O)-methyltransferase 67 264 IPR004538 -
Seca4g10322 284 ProSiteProfiles S4 RNA-binding domain profile. 66 126 - -
Seca4g10322 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 267 IPR029063 -
Seca4g10322 284 Pfam S4 domain 66 113 IPR002942 GO:0003723
Seca4g10322 284 Pfam FtsJ-like methyltransferase 122 271 IPR002877 GO:0008168|GO:0032259
Seca4g10322 284 SMART s4_6 66 131 IPR002942 GO:0003723
Seca4g10322 284 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 61 265 IPR047048 GO:0008168
Seca4g10322 284 CDD S4 66 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10322 Seca-Chr4 238696785 238703839 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10322 K06442 - gmx:100781303 447.203