Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10309 ATGGCGATGTTGGGTGGTGCAACTCCATGGGCGAAGGTTGTTGCTCCTCCCCTTCTGCAACAATCTTACACTGCACGAACCTTCTTCTTCCGAAGGAAATTTTCAGTCACTGCTTATTCACAATCTCCCCTTCCCGTTCGTGTTCGTTTTGCTCCTTCTCCTACCGGTAACCTTCATGTTGGTGGTGCCAGAACAGCCCTGTTCAATTACTTGTTCGCTAGGTCCAAAGGTGGGAAATTTGTGTTGAGAATCGAGGACACTGACTTGGAGAGGTCTACCCGGGAATCTGAGGATGCCGTGCTTCGAGATCTTTCTTGGCTTGGCCTTGATTGGGATGAAGGCCCTGGTATTGGTGGGGATTATGGTCCATATAGGCAGTCTGAAAGGAATGCTTTGTACAAACAATATGCTGAGAAACTCCTTCAATCCGGTCATGTTTATCGCTGCTTTTGTTCTAATGAGGAATTAGAGCAAATGAAGGAGATTGCCAAGCTAAAGCAACTGCCTCCAGTATACACAGGTAAATGGGCAAGTGCAACCAGTGAGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATTCCGGTTTCGTGTCCCCAAAGGAAGTTTAAAAATTAATGACATAATACGAGGAGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCTGTTTATAACTTTTGTGTGACAGTAGATGATGCTACCATGGCTATTTCCCATGTTATCAGAGCAGAGGAGCATCTACCGAACACTCTAAGGCAGGCATTGATATATAAGGCACTAGAATTTCCCATGCCTTACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAAAGACATGGAGCAACATCAGTGGGTCAGTTCAGGGAGATGGGATACCTACCTGAAGCAATGGTGAATTACCTAGCTTTATTAGGTTGGGGTGATGGGACTGAAAATGAGTTTTTCACCCTTGATCAACTTGTTGAAAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTGTTTTTGATTCCGCAAAGTTAAGGTGGATGAATGGTCAGCATTTAAGAGCACGCCCATCAGAGGAGTTAACCAATCTTATTGGAGAACACTGGAAGACATCTGGCTTGCTCACAGAATCGGATGGACCCTTTATTGATGTGAGATCCAATTGCATGCATGCATTCTTGATTCGGTTTAGTTCCATTTTCTGA 1248 0.4359 MAMLGGATPWAKVVAPPLLQQSYTARTFFFRRKFSVTAYSQSPLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEDAVLRDLSWLGLDWDEGPGIGGDYGPYRQSERNALYKQYAEKLLQSGHVYRCFCSNEELEQMKEIAKLKQLPPVYTGKWASATSEEVEEELAKGTPYTFRFRVPKGSLKINDIIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLDQLVEKFTIERVNKSGAVFDSAKLRWMNGQHLRARPSEELTNLIGEHWKTSGLLTESDGPFIDVRSNCMHAFLIRFSSIF. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10309 415 SUPERFAMILY Nucleotidylyl transferase 46 354 - -
Seca4g10309 415 CDD GluRS_core 46 368 IPR033910 GO:0006424|GO:0008270
Seca4g10309 415 Gene3D HUPs 37 370 IPR014729 -
Seca4g10309 415 FunFam Glutamate--tRNA ligase, mitochondrial 39 370 - -
Seca4g10309 415 NCBIfam glutamate--tRNA ligase 46 386 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Seca4g10309 415 Hamap Glutamate--tRNA ligase [gltX]. 45 415 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Seca4g10309 415 PANTHER GLUTAMATE--TRNA LIGASE 33 398 - -
Seca4g10309 415 PRINTS Glutamyl-tRNA synthetase signature 49 61 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Seca4g10309 415 PRINTS Glutamyl-tRNA synthetase signature 63 74 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Seca4g10309 415 PRINTS Glutamyl-tRNA synthetase signature 250 258 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Seca4g10309 415 PRINTS Glutamyl-tRNA synthetase signature 234 244 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Seca4g10309 415 PRINTS Glutamyl-tRNA synthetase signature 78 91 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Seca4g10309 415 Pfam tRNA synthetases class I (E and Q), catalytic domain 46 361 IPR020058 GO:0004812|GO:0005524|GO:0043039
Seca4g10309 415 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 355 396 IPR008925 GO:0000049
Seca4g10309 415 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 52 63 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10309 Seca-Chr4 238554859 238559498 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10309 K01885 - gmx:100810730 738.799