Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10307 ATGGGACAAGTCTTTGACAAGTTACAGGGTAATGATTGGAGGAAAAGGCAAGTAAGGAAGATAACAGATCGAGTTTTTGACAATGTAAAAAATCAATTGGAAACAGATAAATTGAGTTTTGAAGATCTGTATATTGCTGTTTTACTTGTGTACAATGATATCAATAAGCTTATTCCTGGTCCCCATTTTGATCCTCCATCAAAAGAAAAAGTCAGACAAATCATGAAGGAATGTGATATCAACTTGGATGGAGTAATTGATCGTGATGAATTTTTTGCTTTCATCCAGCAAATGACAGCTGATACAGTCACTGTTGTTAGTCAAAAACTTATTGTCACTTTGGTTGTAGCACCAACAGTTGCAGTGGCAACAAAAAAAGCCACTGAAGGTGTCCCAGGTGTTGGGAGAGTGGTGCAGAGGTTGCCTAATTCAGTTTATGCGTCCCTTGTGACACTTGCAGCTGTGTGGTTTCAAAAGATGGGACAAGATTCTCAAATCTGA 501 0.3832 MGQVFDKLQGNDWRKRQVRKITDRVFDNVKNQLETDKLSFEDLYIAVLLVYNDINKLIPGPHFDPPSKEKVRQIMKECDINLDGVIDRDEFFAFIQQMTADTVTVVSQKLIVTLVVAPTVAVATKKATEGVPGVGRVVQRLPNSVYASLVTLAAVWFQKMGQDSQI. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10307 166 Gene3D - 14 112 - -
Seca4g10307 166 PANTHER CALCIUM ION-BINDING PROTEIN 1 162 - -
Seca4g10307 166 SMART efh_1 70 98 IPR002048 GO:0005509
Seca4g10307 166 SUPERFAMILY EF-hand 25 98 IPR011992 -
Seca4g10307 166 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10307 Seca-Chr4 238535565 238540586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10307 1 156 EF-hand Containing Proteins AT1G64850 69.231 6.15e-80 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10307 - - gmx:100526914 260.766