Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10305 ATGGCGCAAGTGAGGAACAAGCAAGTGATTCTGAGTAACTATGTGTCTGGTTTCCCTAAAGAATCCGACATGAAAGTTGTTGAGAGTTCCATAACTCTCAAGGTTCCAGAAGGTTCCAATGAGGTGCTGCTCAAGAATCTCTACTTGTCTTGTGATCCATACATGCGAGTATGCATGACCAAGGATGGCGCTGAGGTACTTGGTGCCTACACCCCAGGCTCCCCATTGAGAGGACATGGTGTGGCTAGAGTCCTGGAATCTGGAAACCCTGATTATAAGAAAGGTGATTTAGTTTGGGGTGATACTAAATGGGAAGATTATAGCTTGGTTGATCCCTTATCTGCAAGACTTTTCAAAATTGAGCACACTGATGTCCCACTTTCCTATTATACTGGAATTCTTGGAATGCCTGGACTGACTGCTTATGTTGGTTTCTTTGAAATTGGTTTTCCAAAAGAAGGAGAGAATGTTTTTGTTTCAGCTGCCTCTGGAGCAGTTGGTCAACTTGTTGGCCAATTTGCTAAATTGACTGGTTGTTATGTTGTTGGAAGTGCTGGAACTAAAGAGAAGGTGGATCTGTTGAAGAATAAATTAGGATTTGATGAAGCTTTTAATTACAAGGAAGAGCCAGACCTCAATGCAACTTTGAAAAGGTACTTTCCAGAAGGCATTGACATCAACTTTGAGAATGTTGGGGGCAAGACACTTGATGCTTACAATCTTACTCAATTTGAAGGTGTAACAAATTTGGCAAATCTCATATTTAAGCGGATTCGTATGGAAGGTTTTTTGGTATATGAATTCTATCACCTTTATACCAAATTCTTGGAGTTTGTCCTGCCTTATATCAGAGAAGGGAAGGTTGTGTATGTGGAAGACATAGTTGAAGGCCTTGAGAATGGCCCTGCAGCCTTGGTTGGTCTCTATAGTGGTCGGAATTTTGGTAAACAAGTGGTCGTTGTTGCTCCGCAAGTGAGGAACAAGCGAGTGGTTCTAAGGGACTATGTCTCTGGTTTTCCTAAAGAATCCGACATGAACATTGTTGAGAGTACCATAACTCTCAAGCTTCCAGAAGGTTCCAATGAGGTACTGCTAAAAAATCTCTACTTGTCTTGTGATCCATACATGCGAGCCTGCATGAGCAAGGATTATTCTGAGCACCCTGATTATAAGAAAGGTGATTTAGTTTGGGGTAATACTAAATGGGAAGAGTATAGCTTGGTTGGCCCCTCATCTGGAAGACTTTTCAAAATTGAGTACACTGATGTTCCACTTTCCTATTATACTGGAATTCTAGGTATGTCGGGAATGACTGCTTATGGTGGTTTCTTTGAAGTTGGCTCTCCCAAAAAAGGAGAGAAGGTTTTTGTTTCAGCTGCCTCTGGTGCAGTTGGTCAACTTGTTGGCCAATTTGCTAAATTAACTGGTTGTTATGTTGTTGGAAGTGCTGGAACTAAAGAGAAGGTGGATCTGTTGAAGAATAAATTTGGATATGATGAAGCTTTCAACTACAAAGATGAGCCAGACCTGAATGAAGCTTTGAAAAGGTACTTTCCAGAAGGCATTGACATTAACTTTGAGAATGTTGGAGGCAAGATACTTGATGCTGTACTCCTAAATATGAGAGTCCATGGCCGCATACCTTTATGTGGAATGATCTCACAGTATAATCTTACTCAATTTGAAGGTGTAACAAATTTGACAAATCTCATACTTAAGCGGGTTCGAATGGAAGGTTTTGTTGCTACTGATTTCTATCACCTTTATCCCAAATTCTTGGAATTAGTCCTGCCTCATATCAGAGAAGGAAAGGTTGTGTATGTGGAAGACATAGCTGAGGGCCTTGAGAATGGCCCTGCAGCCTTGGTTGGCCTCTTTAATGGTCACAATGTTGGTAAACAAGTGGTTGTTGTTGCTCATGAATGA 1926 0.4117 MAQVRNKQVILSNYVSGFPKESDMKVVESSITLKVPEGSNEVLLKNLYLSCDPYMRVCMTKDGAEVLGAYTPGSPLRGHGVARVLESGNPDYKKGDLVWGDTKWEDYSLVDPLSARLFKIEHTDVPLSYYTGILGMPGLTAYVGFFEIGFPKEGENVFVSAASGAVGQLVGQFAKLTGCYVVGSAGTKEKVDLLKNKLGFDEAFNYKEEPDLNATLKRYFPEGIDINFENVGGKTLDAYNLTQFEGVTNLANLIFKRIRMEGFLVYEFYHLYTKFLEFVLPYIREGKVVYVEDIVEGLENGPAALVGLYSGRNFGKQVVVVAPQVRNKRVVLRDYVSGFPKESDMNIVESTITLKLPEGSNEVLLKNLYLSCDPYMRACMSKDYSEHPDYKKGDLVWGNTKWEEYSLVGPSSGRLFKIEYTDVPLSYYTGILGMSGMTAYGGFFEVGSPKKGEKVFVSAASGAVGQLVGQFAKLTGCYVVGSAGTKEKVDLLKNKFGYDEAFNYKDEPDLNEALKRYFPEGIDINFENVGGKILDAVLLNMRVHGRIPLCGMISQYNLTQFEGVTNLTNLILKRVRMEGFVATDFYHLYPKFLELVLPHIREGKVVYVEDIAEGLENGPAALVGLFNGHNVGKQVVVVAHE. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10305 641 FunFam Prostaglandin reductase 2 431 607 - -
Seca4g10305 641 SMART PKS_ER_names_mod 42 319 IPR020843 GO:0016491
Seca4g10305 641 Gene3D - 431 607 - -
Seca4g10305 641 CDD double_bond_reductase_like 325 638 - -
Seca4g10305 641 Gene3D - 133 290 - -
Seca4g10305 641 Pfam N-terminal domain of oxidoreductase 328 383 IPR041694 -
Seca4g10305 641 Pfam N-terminal domain of oxidoreductase 7 112 IPR041694 -
Seca4g10305 641 CDD double_bond_reductase_like 4 321 - -
Seca4g10305 641 PANTHER PROSTAGLANDIN REDUCTASE 325 638 IPR045010 GO:0016628
Seca4g10305 641 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 430 601 IPR036291 -
Seca4g10305 641 Gene3D - 330 636 - -
Seca4g10305 641 FunFam Prostaglandin reductase 2 133 244 - -
Seca4g10305 641 Pfam Zinc-binding dehydrogenase 463 596 IPR013149 -
Seca4g10305 641 Pfam Zinc-binding dehydrogenase 165 247 IPR013149 -
Seca4g10305 641 SUPERFAMILY GroES-like 325 468 IPR011032 -
Seca4g10305 641 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 130 287 IPR036291 -
Seca4g10305 641 Gene3D - 9 319 - -
Seca4g10305 641 SUPERFAMILY GroES-like 584 636 IPR011032 -
Seca4g10305 641 SUPERFAMILY GroES-like 3 170 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10305 Seca-Chr4 238512609 238525441 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10305 K19825 - gmx:100812880 540.806