Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10288 ATGGCGGTTAGGCAAAGAGCAGTAACAGCACTTCCAAACCTCATACGCAGTCTCCGAAAGGAACAACCTTTGAAGCCCCAAACCCATGCCTCTGCCTTGCCTTCTCTCCGACGCGCTTTCTCTTTGTACGATCAGATCAACCTCATCGATCAAGTCCCCGATGACCAGCTCCGATTTCAAGGGTATAATGATACAGGGTTTACCGTAAATGGGGTTGAATATGAAGGAAGCTTGCTTTGTGTTGGAAATTTGCTCTTGTCTTGGAAACCCAAGAAGTTTTCAGAGATCACTGCTGAAAGCTTGTCGCTCTTCCAAACTGTACGCCCTATTCCAGAGATTTTGATTATTGGCTGTGGAAGGAACATCCAACCTGTAGATCCTGAACTTAGACGGTTTGTTCGGTCTACTGGCATGAAGTTAGAGGCAGTTGACTCGAGATGCAAGGTAATAGCGGCGGTTAGGTTGGAGAATGGGAAGCCAAGTCCTCCTAGTGAGTCAGTAGTTAACAGAGGTAGTGGAAGTGCGATTCCCAGTTTCTTAGTTGCGCCAAATTCGCGTATTCAGGATTTGGTTAACAGAAATGACACTCGTCTTCGAATATTTTCTGGCACCGCCAACCCTGCCCTCGCTCAGGAAATTGCATGCTACATGGGCCTGGAGCTTGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTTCAGCTGCAAGAGAGTGTCAGGGGGTGTGACGTGTTTCTTGTGCAGCCCACATGTCCTCCCGCCAATGAGAATCTTATGGAGCTTCTCATAATGATCGATGCCTGCAGGAGAGCTTCAGCCAAAAATATCACTGCAGTCATTCCGTATTTCGGATATGCTAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTTCTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTATATGGACAGCCTGTTATACTTGATTACCTCGCCAGCAAGACTATTTGTGCAGACGATTTGGTAGTTGTCTCACCAGATGTTGGAGGTGTTGCTAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGACGTCACGGGCATAATGTTGCTGAGGTGATGAATTTGATAGGTGATGTGAAGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGTCCTCCTGCTATAGAGAGGTTGTCAAGCGGTTTGTTTCAAGAAGTTATCATAACTAATACAATTCCAGTGGCAGAACAGAACTATTTCCCCCAACTAACTGTCCTTTCAGTGGCAAACCTTCTGGGCGAGACTATATGGCGTGTTCATGATGATTGCTCAGGTGGAATTGAACCTTATTCCAGTTTGGGCATTGATTGA 1545 0.4524 MAVRQRAVTALPNLIRSLRKEQPLKPQTHASALPSLRRAFSLYDQINLIDQVPDDQLRFQGYNDTGFTVNGVEYEGSLLCVGNLLLSWKPKKFSEITAESLSLFQTVRPIPEILIIGCGRNIQPVDPELRRFVRSTGMKLEAVDSRCKVIAAVRLENGKPSPPSESVVNRGSGSAIPSFLVAPNSRIQDLVNRNDTRLRIFSGTANPALAQEIACYMGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICADDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETIWRVHDDCSGGIEPYSSLGID. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10288 514 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 198 314 IPR029099 -
Seca4g10288 514 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 197 502 IPR005946 GO:0000287|GO:0004749|GO:0009165
Seca4g10288 514 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 198 508 IPR037515 GO:0004749
Seca4g10288 514 Pfam Protein of unknown function (DUF498/DUF598) 60 146 IPR007523 -
Seca4g10288 514 SMART Pribosyltran_N_2 198 314 - -
Seca4g10288 514 SUPERFAMILY PRTase-like 263 499 IPR029057 -
Seca4g10288 514 NCBIfam ribose-phosphate diphosphokinase 199 501 IPR005946 GO:0000287|GO:0004749|GO:0009165
Seca4g10288 514 FunFam NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 43 160 - -
Seca4g10288 514 Pfam Phosphoribosyl synthetase-associated domain 399 502 IPR005946 GO:0000287|GO:0004749|GO:0009165
Seca4g10288 514 Gene3D - 201 499 IPR029057 -
Seca4g10288 514 SUPERFAMILY MTH938-like 46 146 IPR036748 -
Seca4g10288 514 CDD PRTases_typeI 357 469 IPR000836 -
Seca4g10288 514 FunFam Ribose-phosphate pyrophosphokinase 201 354 - -
Seca4g10288 514 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 322 337 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Seca4g10288 514 Gene3D - 43 153 IPR036748 -
Seca4g10288 514 Gene3D - 341 484 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10288 Seca-Chr4 238313987 238336124 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10288 K00948 - gmx:100816430 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10288 4 238313987 238336124 Seca4g10288 4 238313987 238336124 ECH