Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10278 ATGACGACCATGGAAAGCTTGATCGGCTTGGTGAACCGAATCCAACAGGCTTGCACCAAGCTCGGTGACTATGGCGGTGCCGATAACAACGCCTTCACTTCTCTCTGGGAAGCTCTCCCTTCCGTCGCCGTCGTCGGTGGCCAGAGTTCGGGTAAGTCCTCGGTTTTGGAGAGCATCGTTGGACGTGACTTTCTGCCTAGAGGATCAGGGATTGTGACGAGGCGTCCGTTGGTGTTGCAGCTTCACAAGATAGATGGTGACGGAGAGGAGTATGCTGAGTTTCTTCACATGCAAGGGAGAAAGATAACCAACTTTGCCCAAGTCCGCCAAGAAATTCAGGATGAAACTGATAGAATGACAGGAAGGACAAAACAAATATCTCCCGTTCCAATTCATCTTAGCATTTATTCTCCACATGTTGTCAACCTAACTTTGATTGATTTACCGGGGTTGACTAAAGTTGCTGTAGAGGGACAGTCTGAGACTATTGTTCAAGACATTGAAAATATGGTTCGATCTTATGTTGAGAAGCCTAATTCTGTCATACTGGCAATATCTCCGGCCAACCAAGACATAGCAACTTCTGATGCTATCAAACTTGCCAAGGAGGTGGATCCCTCAGGTATTAAAATGTTCCATGGAATGCTTGAATCCTTGTCTGTAAACTGTCCAGGTGAGAGGACATTTGGAGTGTTGACAAAACTGGATTTGATGGACAAAGGAACTAATGCATTGGATGTCCTTGAAGGAAGATCTTATCGTCTGCAACATCCTTGGGTTGGTATAGTAAATCGATCCCAAGCAGATATCAATAAAAATGTTGATATGATTGTTGCCAGACGCAGGGAGCGTGAATATTTTGAAACCAGTCCTGACTATGGGCACTTAGCCAATAAAATGGGCTCAGAATACCTTGCAAAACTTCTCTCACAGGTTTGTTTTTCAGAAAGTTGTTGTTTGCCCTTCTTTTATCACTTGGAGTCAGTTATTAGGGCACGGATGCCTAGTATAACATCTTTGATAAACAAAAACATTGATGAACTTGAATCAGAGATGGATCATCTTGGGAGACCAATTGCTGTTGATGCTGGGGCTCAACTATACACCATCCTAGATCTTTGCCGTGCATTTGAACGGATATTCAAGGAGCATTTAGATGGAGGGCGGCCAGGAGGAGATAGGATATATAATGTCTTTGACAATCAGCTTCCTGCTGCTTTACGGAAGCTTCCAATTGATCGGCATCTTTCTCTTCAAAATGTGAAGAGAGTAGTATCAGAGGCAGATGGTTACCAGCCTCACTTAATTGCTCCAGAGCAAGGTTACCGGCGCCTGATTGAGGGGGCTCTCGGTTACTTCAGAGGCCCAGCTGAAGCTTCAGTTGATGCAGTTCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCAGAGACTCAGGAACTGAAACGTTTCCCAACTCTTCAAGCCGAAATAGCTGCAGCTACAAATGAGGCTTTAGAGAGGTTCCGTGAAGAGAGCAAGAAGACAACTATTCGGCTTGTGGATATGGAATCTTCGTATCTCACTGTGGAGTTCTTCCGGAAACTTCCTCAAGAAATGGAGAAAGCTGGAAATCCCACTAATCCAAATAATCCAGCTAATCCAGCCACCAATCCAAATGTGGATCGATATGGAGAGGGGCATTTTAGGAGGATTGGATCAAATGTGTCATCCTATGTAGGCATGGTATCAGACACTCTCAGGAACACGATTCCAAAGGCCGTGGTTTATTGTCAAGTCAGACAAGCAAAACAGTCATTGCTAAACCATTTCTACATACAAATAGGGAAGAAAGAGGCTAAGCAGCTAGCACAGTTGTTGGATGAAGACCCTGCAGTGATGGACAGGAGACAACAATGTTTTAAAAGGCTTGAATTATATAAAGCAGCAAGGGATGAAATTGACTCCATTTCTTGGGCACGATGA 1968 0.4416 MTTMESLIGLVNRIQQACTKLGDYGGADNNAFTSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKIDGDGEEYAEFLHMQGRKITNFAQVRQEIQDETDRMTGRTKQISPVPIHLSIYSPHVVNLTLIDLPGLTKVAVEGQSETIVQDIENMVRSYVEKPNSVILAISPANQDIATSDAIKLAKEVDPSGIKMFHGMLESLSVNCPGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRREREYFETSPDYGHLANKMGSEYLAKLLSQVCFSESCCLPFFYHLESVIRARMPSITSLINKNIDELESEMDHLGRPIAVDAGAQLYTILDLCRAFERIFKEHLDGGRPGGDRIYNVFDNQLPAALRKLPIDRHLSLQNVKRVVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHFVLKELVRKSIAETQELKRFPTLQAEIAAATNEALERFREESKKTTIRLVDMESSYLTVEFFRKLPQEMEKAGNPTNPNNPANPATNPNVDRYGEGHFRRIGSNVSSYVGMVSDTLRNTIPKAVVYCQVRQAKQSLLNHFYIQIGKKEAKQLAQLLDEDPAVMDRRQQCFKRLELYKAARDEIDSISWAR. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10278 655 ProSiteProfiles GED domain profile. 563 655 IPR020850 -
Seca4g10278 655 CDD DLP_1 39 312 IPR001401 GO:0003924|GO:0005525
Seca4g10278 655 Gene3D Dynamin, middle domain 368 631 - -
Seca4g10278 655 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 65 74 IPR019762 -
Seca4g10278 655 Pfam Dynamin family 42 234 IPR045063 -
Seca4g10278 655 Pfam Dynamin central region 243 523 IPR000375 -
Seca4g10278 655 Gene3D - 4 344 IPR027417 -
Seca4g10278 655 PRINTS Dynamin signature 137 154 IPR022812 -
Seca4g10278 655 PRINTS Dynamin signature 187 205 IPR022812 -
Seca4g10278 655 PRINTS Dynamin signature 64 81 IPR022812 -
Seca4g10278 655 PRINTS Dynamin signature 39 57 IPR022812 -
Seca4g10278 655 SMART dynamin_3 4 273 IPR001401 GO:0003924|GO:0005525
Seca4g10278 655 Pfam Dynamin GTPase effector domain 560 650 IPR003130 GO:0003924|GO:0005525
Seca4g10278 655 PANTHER DYNAMIN 5 650 IPR022812 -
Seca4g10278 655 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 36 321 IPR030381 GO:0005525
Seca4g10278 655 SMART GED_2 558 651 IPR003130 GO:0003924|GO:0005525
Seca4g10278 655 FunFam Dynamin-related protein 1C 366 631 - -
Seca4g10278 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10278 Seca-Chr4 238089279 238096121 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10278 - - gmx:100790977 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10278 4 238089279 238096121 Seca4g10278 4 238089279 238096121 ECH