Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10274 ATGACTGCCAAAATTCTTGTGTATATAGTGGTTGATCTGAAGAGACTTGAAGTTCAAGCAAGAGATGGACCTTCTGATCCTAATGCACTGGCCAAGTGGCGGATACTTAACCGCTTGCACGACAGAAATGAGACTATGTACTATAAGGTTTTGATTGCCAACATTGAGGAATATGCACCAATAGTGTATACTCCAACAGTGGGTCTTGTATGTCAGAACTATAGTGGACTGTTTAGAAGGCCAAGAGGAATGTATTTCAGTGCTCAGGATCGTGGAGAAATGATGTCTATGGTCTATAACTGGCCAGCTGAGCAGGTTGATATGATTGTAGTTACTGATGGGAGCAGAATTCTGGGACTTGGAGATCTTGGAGTTCAAGGAATTGGCATTGCCATTGGGAAGCTTGATCTATATGTTGCTGCTGCTGGGATAAATCCTCAAAGGGTACTCCCGGTGATGATTGATGTAGGTACTAACAATGAGCAGTTACTCGAAGATCCCTTATATTTGGGGTTGCAGCAGCATCGTCTTGATGGGGACAACTATCTTGCTGTTGTAGATGAATTTATGGAGGCCGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGTTTGAAGATTTCCAAAGCAAATGGGCTTTTAAGTTATTACAGCGGTATAGAACTACCTACAGAATGTTCAATGATGATGTGCAGGGAACAGCTGGTGTTGCAATTGCTGGACTTCTAGGTGCTGTAAGAGCGCAAGGAAGGCCAATGATTGACTTCCCAAAACAGAAGATTGTTGTTGCTGGTGCTGGAAGTGCTGGAATTGGCGTTCTTAATGCAGCAAGAAAAACAATGGCAAGGATGTTGGGTAATAATAAAGTAGCTTTTGAGAGTGCAAAGAGTCAATTTTGGGTTGTTGATGCACAGGGATTAATCACAGAAGGACGTGAAAATATTGATCCAGATGCCCTTCCTTTTGCAAGGAATTTGAAAGAAATGGATCGCCAAGGACTAAGGGAGGGAGCAAGCCTAGTGGAAGTGGTAAAAAAAGTGAAGCCTGATGTCCTCCTGGGACTATCTGCTGTTGGAGGATTGTTCTCAAAAGAGGTGTTAGAGGCCCTCAAGGATTCAACATCGACGAGACCAGCCATATTTGCCATGTCAAATCCAACAAAGAATGCTGAATGCACTCCTGAAGAAGCATTCTCCATTTTGGGTGACCATGTTATATTTGCAAGTGGAAGTCCATTCAGTGATGTGGATCTTGGAAATGGTAGGATTGGCCACTGCAACCAGGGAAACAACATGTACCTCTTTCCAGGCATTGGTCTTGGAACTCTTTTGTCTGGCTCTAGGATCATATCTGATGGCATGCTCCAGGCTGCTGCTGAGCGTCTGGCTGCATATATGAGTGAAGAGGAGGTCCTCAAAGGGATTATTTTCCCTTCAATATCCAGAATTCGAGATATTACGAAGGAGGTAGCTGCAGCTGTTATAAAAGAAGCTGTGGAGGAGGATCTTGCTGAAGGACATAATGAAATGGATGCTCGAGAGCTGCGCAAACTTAGTCAGGATGAAATCGTGGAATATGTGAAGAATAACATGTGGAGTCCAGAGTACCCAACACTAGTTTACAAGAAAGATTGA 1632 0.4357 MTAKILVYIVVDLKRLEVQARDGPSDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAQDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEQLLEDPLYLGLQQHRLDGDNYLAVVDEFMEAVFTRWPNVIVQFEDFQSKWAFKLLQRYRTTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNKVAFESAKSQFWVVDAQGLITEGRENIDPDALPFARNLKEMDRQGLREGASLVEVVKKVKPDVLLGLSAVGGLFSKEVLEALKDSTSTRPAIFAMSNPTKNAECTPEEAFSILGDHVIFASGSPFSDVDLGNGRIGHCNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAERLAAYMSEEEVLKGIIFPSISRIRDITKEVAAAVIKEAVEEDLAEGHNEMDARELRKLSQDEIVEYVKNNMWSPEYPTLVYKKD. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10274 543 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 26 229 IPR046346 -
Seca4g10274 543 Gene3D - 10 227 IPR037062 GO:0004471
Seca4g10274 543 PIRSF ME 12 541 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 PANTHER MALIC ENZYME-RELATED 28 535 - -
Seca4g10274 543 Gene3D - 228 543 - -
Seca4g10274 543 FunFam Malic enzyme 228 542 - -
Seca4g10274 543 SMART Malic_M_2 230 498 IPR012302 GO:0051287
Seca4g10274 543 PRINTS Malic enzyme signature 142 164 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 PRINTS Malic enzyme signature 226 242 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 PRINTS Malic enzyme signature 46 70 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 PRINTS Malic enzyme signature 374 390 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 PRINTS Malic enzyme signature 106 135 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 PRINTS Malic enzyme signature 201 219 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 PRINTS Malic enzyme signature 260 276 IPR001891 GO:0004470|GO:0004471
Seca4g10274 543 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 230 539 IPR036291 -
Seca4g10274 543 CDD NAD_bind_1_malic_enz 230 533 - -
Seca4g10274 543 Pfam Malic enzyme, NAD binding domain 230 498 IPR012302 GO:0051287
Seca4g10274 543 FunFam Malic enzyme 3 227 - -
Seca4g10274 543 SMART malic_2 40 220 IPR012301 GO:0004471
Seca4g10274 543 Pfam Malic enzyme, N-terminal domain 40 220 IPR012301 GO:0004471
Seca4g10274 543 ProSitePatterns Malic enzymes signature. 226 242 IPR015884 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10274 Seca-Chr4 238048214 238070480 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10274 K00028 - gmx:100799344 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10274 4 238048214 238070480 Seca4g10274 4 238048214 238070480 ECH