Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10214 ATGTATGGCGGTGATGAAGTATCAGCAATAGTAATTGACTTGGGTTCACACACTTGTAAAGCTGGTTATGCCGGTGAAGATGCCCCCAAGGCTGTGTTTCCTTCTGTTGTTGGAGCAATTGATCAAATGGATATTGACGAAGCTGATAATGCTGAAAAGAACTCTGCCTCTGCTGCGGAATCAAAGAACAATCTTAGAAATGCTGATTCTGACAAAGCCAAGGGAAAGAGAAAATTGTACGTAGGATCTCAGTCCTTGGGATACCGCAGAGATTATATGGAGGTGTTGTCTCCATTAAAGGATGGAATTGTTGCTGACTGGGATATTGTTGATAGCATATGGGATCATGCCTTCAGGGAGTGCCTATTGATTGACCCTAAAGAGCATCCGATGCTCCTTGCAGAGCCTTCTTCTAATGCACAACAACAGAGAGAAAGGTATTATGGGGCAGCAGAGCTTATGTTTGAGAAGTACAAAGCACCTGCATTATTTTTGGCGAAGAATGCTGTTCTGACTTCTTTTGCATCAGGGCGTGCAACGTCATTAGTTGTTGACTGTGGTGGAGGATCAACTACAGTTGCACCAGTCCATGATGGTTATGTTCTTCAAAAGGCTGTGGCTACCTCTCCAATTGGAGGAGAATTTCTTACAGATTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATTGTGATTAAACCACGGTATTCCTTTAGAAGAAAGGAAATACGCCCTGGAGAGTTTCAGACTGTAGATCTTGATTTTCCAAATACAACTGAAAGTTACAAACTCTACTCCCAGAGGGTGATTGCTAGTGATATCAAGGAATGTGTGTGCCGTGCTCCAGATACTCCTTATGATGAGAGTGCATATTCAAACATCCCAATGACCCCATATGAGCTTCCTGATGGCCAGACAATTGAAATTGGAGCTGACAGGTTTAAGATTCCAGATGTTCTTTTCAATCCATCCCTGGCTCAGTCTATTCCTGGTATGGAGAGCTTTGCAGAGATTGTTCCTTCAGTTCGTGGCCTTCCTCAGATGGTTATAGAAAGCATTAATAAGTGTGATGTAGACATTCGAAGAGAATTATTCAGTAGCATACTGCTTGCTGGTGGCACAGCTTCGATGCAACAACTGAAGGAACGGCTTGAGAAAGACTTGCTAGAGGAATCCCCTCAAGCAGCTAGAGTAAAAGTATTGGCCAGTGGAAATGCGACTGAAAGAAGGTTTAGTGTTTGGATAGGGGGTAGTATATTGGCTTCTCTTGGCTCCTTCCAGCAAATGTGGTTCTCCAAATCCGAGTATGAAGAGCATGGAGCTTCATATATCCAAAGGAAGTGTCCTTGA 1347 0.4328 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDEADNAEKNSASAAESKNNLRNADSDKAKGKRKLYVGSQSLGYRRDYMEVLSPLKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNAQQQRERYYGAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIVIKPRYSFRRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLAQSIPGMESFAEIVPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10214 448 Gene3D - 392 448 - -
Seca4g10214 448 Gene3D Actin; Chain A, domain 4 213 326 - -
Seca4g10214 448 FunFam actin-related protein 4 390 448 - -
Seca4g10214 448 SUPERFAMILY Actin-like ATPase domain 177 447 IPR043129 -
Seca4g10214 448 MobiDBLite consensus disorder prediction 50 71 - -
Seca4g10214 448 FunFam Actin-related protein 4 1 186 - -
Seca4g10214 448 CDD NBD_sugar-kinase_HSP70_actin 97 207 - -
Seca4g10214 448 SMART actin_3 7 448 IPR004000 -
Seca4g10214 448 Pfam Actin 4 447 IPR004000 -
Seca4g10214 448 Coils Coil 48 68 - -
Seca4g10214 448 SUPERFAMILY Actin-like ATPase domain 5 184 IPR043129 -
Seca4g10214 448 PANTHER ACTIN 9 441 IPR004000 -
Seca4g10214 448 Gene3D - 4 184 - -
Seca4g10214 448 Gene3D - 185 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10214 Seca-Chr4 236691742 236706573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10214 1 447 Miscellaneous Gene Families AT3G53750 36.222 1.02e-91 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10214 K11340 - gmx:100785066 818.92