Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10196 ATGGAAGCGCTAAAACTGTGGAACCTGACATGGCACCCGCTCAAGCACTTATTTCACCCTCACTCTTCTTCCATCGCCTCTAAGGCATTTCGTCGAACCCCTCGCAGGCTCATTCTCCGCTCCTCCTCCTCTTCTTCTGCCGCCACCACTGCCTCATCCGCCGGTCGCAACCGGCGTAGCTCTGCTTCCTCCTCCACGACTTCGACTTCCGACAGGGAGGCTATTCGAGCCATCCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTCGATCCATATGCTTATGAATGGGACAAAACACACAGTGCTAATCAGCTGCAAGATATATATAGAGATTTAGGAAATGGTGAGGAAAAAAATAGTGAGAATGATCACGTATCTGTTGCAGGAAGAATTGTTGCAAGAAGGGCATTTGGAAAGCTTGCCTTTTTGACACTAAGAGATGATTCTGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGTGACCAGTTTGAGCAGTTGAAGGCACATGTTGATATTGGTGACATACTAGGTGCAAGAGGAACAATAAAGCGCACAGAAAAAGGAGAACTTTCTGTGTGTATGCTATCTTTTGCAATCCTTACAAAATCTCTGCTACCACTGCCTGACAAATATCATGGTCTAACTGATATAGATAAACGTTATCGCCAGAGGTATGTAGATATGATTGCGAATCCAGAGGTAGCAGATGTATTCCGTAAAAGGGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTAGAAACTCCTGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCTAGACCATTTATTACATACCATAATTCTCTTGAAAGGGACTTATATCTGAGAATTGCAACTGAATTGCATCTAAAGAGAATGCTGGTGGGTGGGTTTGAAAAAGTATATGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCTACTCGTCATAATCCTGAATTCACAACTATAGAGATGTATGAAGCATATTCGGACTACAAAAGCATGATGAATCTTGCAGAGGAGATTGTCACTCAATGTGCTCTTGCAGTTCATAGGAAGCTTACCATTGATTATCAGGGAGTAGAAATATGTCTGGAGAGGCCCTGGAGGAGGGAAACCATGCACAACCTCGTCAAGGAAATAGCTGGGATCAATTTCAATGAATTGGGAAATGATCTTGAGGTTGCAAAGCAAGTTATTCTGGGTACCCTGGGAAAGAATCTTGATAACAAGGATAAAGCTTCCATTGAAGCCTGCCAATCTGTTGGCCACCTCCTTAATGAGGTTTGGTTGGCTTCACTTTTTTTCTTCCTCTCTCATATGTTCATCCTTTTTTTATTCAATTTATTTGATAAGTTGGATATCTTTTCAATCAATCAAACTTATTCTTTTGAGGTGGTGATCTATATATTAACATCCCTTTCTGACTACTTCTTTACATTTTTCTATATTGTCAATTTGACTTGCATAAACTAA 1518 0.4157 MEALKLWNLTWHPLKHLFHPHSSSIASKAFRRTPRRLILRSSSSSSAATTASSAGRNRRSSASSSTTSTSDREAIRAIRLKKVEELRSKGLDPYAYEWDKTHSANQLQDIYRDLGNGEEKNSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIGDQFEQLKAHVDIGDILGARGTIKRTEKGELSVCMLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLERDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYKSMMNLAEEIVTQCALAVHRKLTIDYQGVEICLERPWRRETMHNLVKEIAGINFNELGNDLEVAKQVILGTLGKNLDNKDKASIEACQSVGHLLNEVWLASLFFFLSHMFILFLFNLFDKLDIFSINQTYSFEVVIYILTSLSDYFFTFFYIVNLTCIN. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10196 505 PRINTS Lysyl-tRNA synthetase signature 303 316 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Seca4g10196 505 PRINTS Lysyl-tRNA synthetase signature 258 268 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Seca4g10196 505 PRINTS Lysyl-tRNA synthetase signature 274 290 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Seca4g10196 505 PRINTS Lysyl-tRNA synthetase signature 321 338 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Seca4g10196 505 Pfam OB-fold nucleic acid binding domain 127 197 IPR004365 GO:0003676
Seca4g10196 505 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 243 483 IPR006195 -
Seca4g10196 505 FunFam Lysine--tRNA ligase 72 214 - -
Seca4g10196 505 SUPERFAMILY Nucleic acid-binding proteins 72 214 IPR012340 -
Seca4g10196 505 SUPERFAMILY Class II aaRS and biotin synthetases 221 411 IPR045864 -
Seca4g10196 505 CDD LysRS_N 126 233 IPR044136 GO:0000166
Seca4g10196 505 Gene3D - 65 215 IPR012340 -
Seca4g10196 505 Gene3D Bira Bifunctional Protein; Domain 2 216 456 IPR045864 -
Seca4g10196 505 PANTHER LYSYL-TRNA SYNTHETASE 52 443 - -
Seca4g10196 505 MobiDBLite consensus disorder prediction 41 71 - -
Seca4g10196 505 FunFam Lysyl-tRNA synthetase 216 272 - -
Seca4g10196 505 Pfam tRNA synthetases class II (D, K and N) 223 398 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10196 Seca-Chr4 236414361 236427957 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10196 K04567 - gmx:100787720 744.191