Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10180 ATGATGGCTATCATGGCGTTGCCACTTGTTATCTCTGTTCTCAGACCCCACACCACCATCCGCCTCCGCCCCTCACTACTACGTCATCGTTTCACCACTGTCTCCGCCACCGTCACTCCTCCTCCTCCTCCCCCCCCACCTTCACCGTTTCTCTCTCACCACTCTTCTTCTTCTCCTTCTACACACCACGACACTCCTCCCCACAAGTCCTCATCATCCCTCACCTTCCAGCAAGCCATTCAGCGCCTTCAGGAATATTGGGCTTCCGTTGGATGTTCCATAATGCAATGCAGCAATACAGAGGTTGGAGCTGGAACTATGAATCCTCTTACATATTTAAGGGTGCTTGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCATTCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCACAGGATCTTTTTATCCACAGCCTTTCAGCTTTAGGTATTGATGTTACTGCACATGATATACGATTTGTGGAGGACAACTGGGAGAGTCCGGTACTTGGTGCTTGGGGTTTAGGCTGGGAAATCTGGATGGATGGAATGGAGATTACCCAATTCACATACTTTCAGCAGGCTGGAAGTATGCAGTTATCACCTGTATCTGTGGAAATCACTTATGGCCTTGAGCGAATCCTCATGTTACTGCAGGGAGTTGATCACTTCAAAAAGATCAAATATTCTGATGGAATTACATACGGAGAGCTGTTCTTGGAGAATGAAAAGGAAATGAGTGCATATTACTTGGAGCATGCCAGTGTTGATCATGTTCAAAAACATTTTGATTTCTTTGAGGAGGAAGCCCGTCGCTTACTTTCTTCAGGCCTTGCAATCCCTGCGTACGATCAGCTTCTGAAAACGTCTCATGCTTTTAATATCTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCACAGCTTTGGTTGAAGACCAGGGAGATGCTAGGTTTCCCCCTAGGTTTCATCCCTGAACCTGATCAATTTGTATTGCCAAAGGAAGTTTTGGAGGTTGCATGTGAGAAGGTGCATGATCATTCGAGAGCATTTGTTCTTGAAATTGGAATAGAAGAGATGCCACCTCAAGATGTTGCTGATGCAAGCAAGCAACTGAAGGATTTAATATTGCAATTACTGGAACGGCAGAGGTTGAAGCATGGTGAAGTGCAAGTTTTTGGCACCCCACGTAGATTAGTGGTTTCTGTTGAAAATCTTTTTACAAAACAAACAGAAAAGGAGGCTGAGGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCATGAAGGAAAACCAACAAAGGCCATTGAGGGTTTTTCCCGTAGATACTCTGTTCCACTGGACTTGATATACAGAAAGGTTGATGGTGAGTATCTGGATGCAAACACTTGTCTACGGGATGTGGTTGTGTTTCTTCCTGTCCTACTCTTTCTTGATATTGCAGGGAAAACAGAATATGTATATGCTCAGATAAAAGAGTCTTCAAGACATGCTTTGGAGGTTTTGTCTGAAGATTTGCCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGCGCTGGAATTCACAGGTGATGTTTAGCAGGCCGATCCGTTGGATTTTGGCCCTGCATGGAGATGTAGTAGTCCCATTTATGTTTGCTGGAGTGATGAGTGGAAACTTGTCTTGTGGTCTTCGTAATACTACTTCAGCCATTGTCCAGGTAGAAAATGCAGAATCTTATACAGTTGCAATGAAAAATACGGGAATCAATATTGCAGTTGCGGAACGCAAGAAAATTATTTTAGAGCAATCTAATTCATTAGCAGAAAGTATAAATGGCCAAATTCTTGTTCCAGAAGGTTTGCTTGATGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAACGAAACCTTCTTAAGTCTTCCAAAAGATCTTTTGACCATGGTTATGCAAAAGCACCAGAAGTATTTTGCTGTATGTGATGCTAATGGAAAATTGTTGCCTTACTTTATTGCTGTTGCAAACGGAGCAATTGATGTGACTACAGTGAAGAAAGGAAATGAGGCTGTGCTCAGGGCTCGTTATGAAGATGCTAAGTTCTTTTATGAAATGGACACTCGGAAAAGGTTTTCAGAATTCCGAAAGGAACTGAAAAATATTCTCTTTCACGAGAAGCTTGGAACCATGCTGGATAAAATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCATCCTGGATATCAGTGAAGATATGCAACAAATTATCCAAGATGCTGCATCACTTGCCATGTCTGATCTTACCACTGCAGTTGTCACTGAATTTACCTCACTTTCAGGAATAATGGGCCGTCACTACGCCCTTAGAGATGGATACTCAGAGCAGATTGCAGAGGCCTTGCTTGAGATCACGCTTCCTAGATTTTCTGGGGACATGCTTCCCAAAAGTGATGCTGGTGTTGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTTACTGCCGGCTGTCAACCTAGTTCCACAAATGACCCATTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAATTATTGGTGGAAAAGAATAAAAACCTAGATTTTAAAGAGGCTCTGGAACTTGCAGCAGATGTCCAGCCCATTAAAGTAGATCCTCATGTAATAGATGAAGTTGACAAGGGGGTCAATCCAGAATTTGTTCGTTCCATCCTTGCTGAGAGGGCAAATTTTCCCTGTCTAGCAGCAAAATCTGCATATAAAATGGAAGAATTATCAAAGGGCAAGCTTTTTCCTAAAGTAGTTGAAGCATACTCTCGGCCAGCAAGAATTGTTCGTGGGAAGGAAGATGAGCTTCATGGAAAGGTGGATGAGGCTGCTTTCGAAACAAATGAGGAGAGAGTTTTGTGGAGCACATTTTTGTCAGTTAAAAAGAGTATCAATCCTGGTCTTGACATAGATGATTTTATTGATATTTCATCTCAACTCATACAGCCGCTTGAGGATTTCTTTAATAATGTCTTCGTAATGGTGGATGATGACAAGATCAGAGAAAACAGGTTAGCTCTGCTTAAAGGAATTGCTGAACTCCCTAGAGGAATAGCAGACCTTACAGTTCTACCAGGATTTTAA 3252 0.4256 MMAIMALPLVISVLRPHTTIRLRPSLLRHRFTTVSATVTPPPPPPPPSPFLSHHSSSSPSTHHDTPPHKSSSSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIHSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSMQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARRLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFIPEPDQFVLPKEVLEVACEKVHDHSRAFVLEIGIEEMPPQDVADASKQLKDLILQLLERQRLKHGEVQVFGTPRRLVVSVENLFTKQTEKEAEVRGPPVSKAFDHEGKPTKAIEGFSRRYSVPLDLIYRKVDGEYLDANTCLRDVVVFLPVLLFLDIAGKTEYVYAQIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVMSGNLSCGLRNTTSAIVQVENAESYTVAMKNTGINIAVAERKKIILEQSNSLAESINGQILVPEGLLDEVVNLVEAPIPVLGKFNETFLSLPKDLLTMVMQKHQKYFAVCDANGKLLPYFIAVANGAIDVTTVKKGNEAVLRARYEDAKFFYEMDTRKRFSEFRKELKNILFHEKLGTMLDKMTRVENMVTKLSCILDISEDMQQIIQDAASLAMSDLTTAVVTEFTSLSGIMGRHYALRDGYSEQIAEALLEITLPRFSGDMLPKSDAGVVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKEALELAADVQPIKVDPHVIDEVDKGVNPEFVRSILAERANFPCLAAKSAYKMEELSKGKLFPKVVEAYSRPARIVRGKEDELHGKVDEAAFETNEERVLWSTFLSVKKSINPGLDIDDFIDISSQLIQPLEDFFNNVFVMVDDDKIRENRLALLKGIAELPRGIADLTVLPGF. 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10180 1083 PRINTS Glycyl-tRNA synthetase alpha subunit signature 180 204 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 PRINTS Glycyl-tRNA synthetase alpha subunit signature 206 226 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 PRINTS Glycyl-tRNA synthetase alpha subunit signature 128 143 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 PRINTS Glycyl-tRNA synthetase alpha subunit signature 314 330 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 PRINTS Glycyl-tRNA synthetase alpha subunit signature 149 169 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 PRINTS Glycyl-tRNA synthetase alpha subunit signature 229 244 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 NCBIfam glycine--tRNA ligase subunit beta 389 1079 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 MobiDBLite consensus disorder prediction 53 74 - -
Seca4g10180 1083 Pfam Glycyl-tRNA synthetase alpha subunit 76 353 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 Pfam Glycyl-tRNA synthetase beta subunit 389 927 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 FunFam Glycine--tRNA ligase, chloroplastic/mitochondrial 2 278 357 - -
Seca4g10180 1083 CDD GlyRS_alpha_core 75 353 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 MobiDBLite consensus disorder prediction 35 74 - -
Seca4g10180 1083 NCBIfam glycine--tRNA ligase subunit alpha 75 359 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 SUPERFAMILY HD-domain/PDEase-like 743 875 - -
Seca4g10180 1083 Gene3D Bira Bifunctional Protein; Domain 2 61 277 IPR045864 -
Seca4g10180 1083 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 769 1045 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 FunFam Glycine--tRNA ligase alpha subunit 68 277 - -
Seca4g10180 1083 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 75 349 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 Hamap Glycine--tRNA ligase beta subunit [glyS]. 386 1080 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 MobiDBLite consensus disorder prediction 37 52 - -
Seca4g10180 1083 PANTHER GLYCYL-TRNA SYNTHETASE 72 495 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Seca4g10180 1083 SUPERFAMILY Class II aaRS and biotin synthetases 75 353 IPR045864 -
Seca4g10180 1083 Gene3D Class II aaRS and biotin synthetases; domain 2 278 357 - -
Seca4g10180 1083 Hamap Glycine--tRNA ligase alpha subunit [glyQ]. 74 354 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10180 Seca-Chr4 236050319 236078121 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10180 K14164 - gmx:100787365 1802.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10180 4 236050319 236078121 Seca4g10180 4 236050319 236078121 ECH