Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10101 ATGTTCCCCTTACTCCCATTCTTCTTCACCCTTCTCCTCACATCCCCTTCACACACCATCTCAAAAACTACACAAGAATCTCACACATTAGCCACCAAAATAACCATCACAAACCACAACATCCAAAGCTTCACCAACATTGGAAGAGGCAGCAAAATCAGTGGAATATCACAATTCAAAAGATACCTATCTCGCTTTGGCTATCTTCCACCAAATCACAACAACAACGACGAATTCGATGCCACATTGGAATCAGCTCTCATCAAATACCAACAAAATCTTGGACTCCAAATCACAGGGAAACTCGATTCCAAAACGGTTTCTCAAATGATCACACCAAGATGCGGTGTTCCAGACACAAAAACAACAACAACAACATTGAAACATTTTGTGTATTTCCCTGGTAAGCCACGTTGGTCAGGTCCAATGCCAATGACACTCACCTATGCTTTCTCACCAGAATACATGATCCACACATTGACAAAGCACCAAATAAAAACAGCATTCCAACGTGCATTTTCGAGGTGGGCCTCTGTTATTCCTATTAGTTTTATTGAAGCAGAGGACTATGCTTTTGCGGAGATAAAGATTGGGTTTTACAGTGGTGACCATGGTGATGGTGAGCCTTTTGATGGGGTTCTTGGTGTGTTGGCACATTCTTTCTCACCGGAGATTGGGAGGCTCCACCTCGACGCGGCGGAGACTTGGGCGGTGGATTTTCAGGCGACGAAGTCGGAGGTGGCGGTGGATTTGGAGTCAGTGGCTACACATGAGATTGGACATTTGTTGGGACTGTCTCATAGTTCGGTGAAAGAGGCTGTTATGTATCCGAGTTTAAGGCCTAGAGATAAGAGAGCTGATTTAAACATGGATGATATAAAAGGAGTTCAATCTCTTTATGGCTCAAATCCTAATTTCAGATCTGAATGGTTACTACAATCTGATATCTCCACTAATCATGGTGTTCATAATTTGGAAGTGGAGCCTTTCAGGTTGGCTATTGGTTTAATTATTAGTACAATTACTTTAATTCTTAGTTTATAA 1044 0.4215 MFPLLPFFFTLLLTSPSHTISKTTQESHTLATKITITNHNIQSFTNIGRGSKISGISQFKRYLSRFGYLPPNHNNNDEFDATLESALIKYQQNLGLQITGKLDSKTVSQMITPRCGVPDTKTTTTTLKHFVYFPGKPRWSGPMPMTLTYAFSPEYMIHTLTKHQIKTAFQRAFSRWASVIPISFIEAEDYAFAEIKIGFYSGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFQATKSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNMDDIKGVQSLYGSNPNFRSEWLLQSDISTNHGVHNLEVEPFRLAIGLIISTITLILSL. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10101 347 CDD ZnMc_MMP 146 301 IPR033739 GO:0008237|GO:0008270
Seca4g10101 347 FunFam Metalloendoproteinase 1 46 306 - -
Seca4g10101 347 Pfam Matrixin 146 301 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Seca4g10101 347 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 131 304 - -
Seca4g10101 347 Pfam Putative peptidoglycan binding domain 56 110 IPR002477 -
Seca4g10101 347 PANTHER MATRIX METALLOPROTEINASE 41 303 - -
Seca4g10101 347 SUPERFAMILY PGBD-like 48 120 IPR036365 -
Seca4g10101 347 SMART col_5 135 302 IPR006026 GO:0006508|GO:0008237|GO:0008270
Seca4g10101 347 PRINTS Matrixin signature 288 301 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca4g10101 347 PRINTS Matrixin signature 193 221 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca4g10101 347 PRINTS Matrixin signature 254 279 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca4g10101 347 PRINTS Matrixin signature 110 123 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca4g10101 347 PRINTS Matrixin signature 169 184 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca4g10101 347 Gene3D Collagenase (Catalytic Domain) 46 307 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10101 Seca-Chr4 234522427 234523470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10101 - K07999 gmx:100781237 481.485