Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10095 ATGGGAAAAATCCCTCCTTCATTTCGTTCCGCAATCTCAAACCCTAACTTGATAAACCCTTCTTCCATTCTTCCCTCTTCTTCCAAACCCCATTACTTTCCGAAGAAAATCCCATCCCATTTCCCCGGAAAATCCCGAAAACCCCAGCAGGAACAACCTCAGCCTCCAAAATCCATCACTCTATTCAAATCCCCAAGCCTCCAAGACGCCAAGACCGTGTTCAACTCCATCATCAAAAGCTCCAATGCCTCCAACGACCTTCGCTTCCACAACTCCCTCCTTCAATCCTACGTCGCAATCTCCACCACCAACGACTCCATCGCTTTTCTCCGCCACATGATGAAGACCCACCCTTCCTTCTCCCCAGACCGATCCACCTACCACATCTTGCTCTCCCAGTCCTGCAAATCCCCCGATTCCACCCTTTCCCCAATTCACCAAACCCTAAATATGATGGTCGCCGACGGCGTAAGCCCCGATAAAGCTACCACCGATATAGTTGTCCGGGCACTCTGTTCGGCAGGCCGGTTAGACCACGCCGTAGAATTGATCAAAGAATTGTCTTTGAAGCATTGCAGCCCTGACACTTACACTTTCAATTTCCTTGTTAAGCATCTCTGTAAGTGCCGTGCATTGAGCTCTGTGTATAATTTCATCGATGATATGCGTAGCAATTTCGGTGTAAAGCCTGATCTTGTTACTTATACAATTCTGATTGATAATGTATGTAACACCAAGAATTTGCGTGAGGCTTTGCGGTTGGTGAGTGTGCTACACGAGGAGGGTTTTAAGCCAGATTGCTTTGTTTACAATACAATTATGAAAGGGTATTGTATGTTGAGTAGGGGGAGTGAAGCAATTGAGGTTTATAATAAAATGAAAGAGGAAGGGGTGGAGCCTGATCTTGTCACTTATAACACTTTGATTTTTGGGTTATCGAAAGCAGGTCGAGTTACAGAAGCCAAGAAGTTATTGCGTGTTATGACGGAAAAGGGTCATTTTCCTGATGAGGTAACTTATACCTCCCTGATGAATGGAATGTGCAGGAAAGGGGAGACCTTGACTGCATTGGCATTGTTTAAAGAGATGGAAGTGAAAGGATGCACTCCGAATTCGTGCACATATAACACACTGCTACACGGGTTATGTAAGTCTAGGTTGTTGGATAAGGCCATTGAATTGTATGGAGTGATGAAATCGGGTGGTCTAAAGCTTGAAACAGCATCTTATGCTACGTTTGTCAGGGCGCTGTGTAGAGATGGTAGAATTGCAGAGGCTTATGAAGTGTTTGATTATGCAATTGAGAGCAAGAGCTTGACAGATGTTGCTGCTTACACAACATTGGAGAGCACACTTAAATGGCTCAGGAAAGCAAAAGAACAAGGCCATGCAACTTAA 1398 0.4499 MGKIPPSFRSAISNPNLINPSSILPSSSKPHYFPKKIPSHFPGKSRKPQQEQPQPPKSITLFKSPSLQDAKTVFNSIIKSSNASNDLRFHNSLLQSYVAISTTNDSIAFLRHMMKTHPSFSPDRSTYHILLSQSCKSPDSTLSPIHQTLNMMVADGVSPDKATTDIVVRALCSAGRLDHAVELIKELSLKHCSPDTYTFNFLVKHLCKCRALSSVYNFIDDMRSNFGVKPDLVTYTILIDNVCNTKNLREALRLVSVLHEEGFKPDCFVYNTIMKGYCMLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKAGRVTEAKKLLRVMTEKGHFPDEVTYTSLMNGMCRKGETLTALALFKEMEVKGCTPNSCTYNTLLHGLCKSRLLDKAIELYGVMKSGGLKLETASYATFVRALCRDGRIAEAYEVFDYAIESKSLTDVAAYTTLESTLKWLRKAKEQGHAT. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10095 465 Pfam Pentacotripeptide-repeat region of PRORP 285 436 IPR033443 -
Seca4g10095 465 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Seca4g10095 465 NCBIfam pentatricopeptide repeat 269 301 IPR002885 -
Seca4g10095 465 NCBIfam pentatricopeptide repeat 233 267 IPR002885 -
Seca4g10095 465 NCBIfam pentatricopeptide repeat 409 437 IPR002885 -
Seca4g10095 465 NCBIfam pentatricopeptide repeat 303 337 IPR002885 -
Seca4g10095 465 NCBIfam pentatricopeptide repeat 373 404 IPR002885 -
Seca4g10095 465 NCBIfam pentatricopeptide repeat 165 196 IPR002885 -
Seca4g10095 465 MobiDBLite consensus disorder prediction 9 28 - -
Seca4g10095 465 SUPERFAMILY HCP-like 245 462 - -
Seca4g10095 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Seca4g10095 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Seca4g10095 465 Pfam PPR repeat family 194 244 IPR002885 -
Seca4g10095 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Seca4g10095 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Seca4g10095 465 Pfam PPR repeat 166 188 IPR002885 -
Seca4g10095 465 Gene3D Tetratricopeptide repeat domain 259 329 IPR011990 GO:0005515
Seca4g10095 465 Gene3D Tetratricopeptide repeat domain 330 464 IPR011990 GO:0005515
Seca4g10095 465 Gene3D Tetratricopeptide repeat domain 60 258 IPR011990 GO:0005515
Seca4g10095 465 PANTHER OS03G0856100 PROTEIN 191 448 - -
Seca4g10095 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Seca4g10095 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Seca4g10095 465 MobiDBLite consensus disorder prediction 1 62 - -
Seca4g10095 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Seca4g10095 465 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10095 Seca-Chr4 234347421 234348818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10095 225 462 Glycosyltransferase AT1G05670 31.148 7.99e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10095 - - cave:132171974 701.819