Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10081 ATGACGCTGGACTCTGTGCCCAGCATGGCCAATTTTTCCTCCACAGCTTCCAACCAGATTCGGTTCCTGCTCAACTCCTTGAACGAAGTCAACTTTGACTCCGTTTTCCACCATCTCTCTCAGGTGATTTCATTCTCCTTCTTCCTCCTCATTTTCGTTTTTTTTGGACGCCTCATTTTTAATTTCACTGAATTTGGAACTGTTGGATGCATTTTGCTGCTTCAAACTTGCTTGGATCACTTTAGTTATGTCAGAAGAGATACAAAAGACATGCAAAGCGAGCCAATTCTTGGGGCAGTCTTTAGGAACCTCTTGGGCAAACCAAACTTCAGTACAGTCTTTTCTGAGTCAATGAAGAATGTAGAAATTAATGAAAGCTTTCTAGAAAGCTTTTGTAATGGATTGCAGTTGTCTTTATTGGAAAAAATTGCCATCAGTCTTGCTTTATCTGATTCTGAAAATCCCGATGCCAGGCTATGTGGCAAGAATTTTTGCATGGCTCAGATTGAGGAATTGTGTGCCAATCCTGGTTCTTTGAGTTGCCATGACCAAATTCAAAATATCATCATCTTCCTCAAACAATCCGAGGGTCTTTCCAAGCATGTGGATTCCTTTATGCAGATATTATCACTGGTGCAGTTCAAGGACACACCACCTTTTGTTTTGACTCCATTGCTACCGGATGAGATGCATGAGGCTGATATCTTAAGGTGGAATATGGAGCTGTTCCATGACTGTGGAGAAAATGATTTTGATGCTATTTTGGCAGACATACAGAAGGAAATGAACATGGGAGATATTGTGAAGGAGCTAGGCTATGGGTGCATGGTTGATGTCTCACAGTGCAAGGAAATATTATCGCTCTTCTTACCTTTAACTGATAATATGCTCTCTAAATTACTTGGTGCTATTGCAAGTACTCATGCAGGGCTGGAGGACAACCAGAGCACATTCTTAACTTTTGGTGCAGCCCTTGGATACAATAACTTGTCTGAGTTACCACCACTGAACACTTGGAATATTGATGTCTTGATAGATACAGTCAAGCAACTTGCACCTCAAACTAATTGGATACGGGTTATTGAAAATCTAGATCATGAAGGATTTTTCCTTCCTAGTGAAGAAGCTTTCTCTTTTCTCATGTCTGTATATAAACATGCCTGTAAGGAGCCATTTCCTCTCCATGCCATCTGTGGGTCTGTCTGGAAGAATACTGAGGGTCAGCTGTCTTTCCTTAAATATGCCGTATCAGCACCACCAGAAATGTTTACCTTTGCACACTCTGTAAGACAGCTGGCATTTGTCGATGCGATTAATGGCCACAAGCTTCAAAATGGACACGCGAATCACGCATGGCTGTGTCTTGAACTTTTGGATGTCCTCTGCCAGCTAGCTGAGAAGGGTCATGCCAGTATTGTTCGATCAATCCTTGATTATCCCCTTAAACACTGTCCAGAAGTCCTGCTTCTTGGGATGGCACATATTAATACTACATACAACCTCCTCCAGCGTGAAGTGTCTCTGATTGTTTTTCCCATGATAGTAAAAAGTTCTGTAGGCAGTGGAATGATTCTACACCTTTGGCATGTTAATCCCAATCTGGTCTTGCGAGGGTTTATGGATTCTCTAAACAGTGATGTAGACAGCATTACAAGAATTGTGGACATCTGCCAAGAGCTAAAGATTCTATCATCAGTGGTGGAAATTATTCCCTCTTATTATAGTATAAGGTTAGCAGCTGTTGCATCAAGAAAAGAATTTCTTGACCTTGTGAAGTGGTTGAGCAGCAACTTAACTACATACAAGGATGTCTTCTTTGAGGAGTGCCTCAAGTTCTTAAAGGAAGTCCATTTTGGTGGATCCCGAAACTTATCTGGCCAATCCTTTCATCAGTCTGGTGCTGTTCTGAATGTCTATACTGAGACAACTGCTACTTTCTTGAAGGTTCTCAAATCTCATACTGACTTGGTTACCTCTAGACTACTTTCTGAGGAGCTTGAGAAGTTGCATATATCTGTTATAGATTCAAATCCAAGACTTCAAAATGGTGGGGCTGCTGATTCATCTACTTCTGATGGATATGCGGATGACATTGAAGCAGAAGCAAACTCCTATTTCCATCAAATGTTTTCTGATCAGTTAACCATTAATGCAATGGTGCAAATGCTTGCCCGTTTCAAGGAATCTTCTGTGAAGAGGGAGAAATCAATTTTTGAATGCATGATTGCAAACTTGTTTGAGGAGTATAGATTTTTCCCAAAATATCCTGAAAGGCAACTCAAAATTGCTGCAGTTCTATTTGGTTCTGTGATCAAGCATCAGCTTGTAACTCATCTCTCTCTGGGGATTGCTCTTCGTTATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCAAAAATGTTTTTGTTTGGAAGTCTGGCATTGGAGCAGTTTGTGGACCGCCTTATTGAGTGGCCTCAGTATTGTAATCACATTCTGCAAATTTCCCATTTGCGCAGTACACATTCAGAAATAGTTGCTTTTATCGAACAGGCTCTTGCCCGGATTTCCTCTGGTCATACAGATGTAGATGGGGTGAGCCATGCTTCTGTAATTAGTAACCATAATTCTACACAGGCTTCATTAGGGCATGTTGAGCTCGGTGGCTCTAGTGTCATACAACCTGGACAGCCACATTTGCCGATGCAGCTTCAACAGAGACGTGAAAATCCTTTGGATGATCGTCACAAAGCCTCTGGTGGTTCATCTGCTGATGTAAAACCGCTCTTATCTTCTCTAGGGCCATCGTCTGTAGTCACACCTGCTGATACTTCTAGTTCTAATGCCTCATCAATGTTATCTTCTTCTCCTGGTTTTGTTCGTCCTTCCCGTGGAGCTACTTCTACCAGGTTTGGATCTGCCTTGAACATTGAAACCTTGGTCGCAGCTGCTGAGAAAAGAGAAACTCCTATTGAGGCTCCAGGTTCAGAGGTTCAGGACAAAATATCATTTATAATTAATAACATTTCTTCTGCTAATTTCGAAGCTAAAGCAAAAGAGTTCACTGAAATTTTGAAAGAGCAGTACTATCCATGGTTTGCGCAGTATATGGTTATGAAAAGAGCGAGCATTGAGCCAAATTTCCATGACTTGTACCTGAAATTCCTGGATAAAGTTAATTCAAAGGCGTTGAACAAAGAGATTGTGCAGGCAACTTATGAAAATTGCAAGGTTCTTTTAGGTTCAGAACTCATAAAGTCAAGTTCAGAAGAGCGCTCTTTGCTTAAAAATCTGGGGAGCTGGCTTGGGAAGTTGACAATTGGCCGGAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAATCTTTGATTATAGAGGCATATGAAAAGGGGCTGATGATTGCTGTTATTCCATTTACTTCAAAGGTCCTGGAACCATGCCAAAGCAGTCTTGCATATCAACCCCCTAATCCTTGGACCATGGGCATTTTGGGATTGCTTGCTGAGATTTATTCAATGCCAAACCTGAAAATGAACCTCAAGTTTGACATAGAGGTTTTATTCAAAAACCTTGGTGTAGATATGAAGGATGTCACACCAACTTCTCTCCTGAAAGATCGCAAAAGAGAGATTGAAGGAAATCCTGATTTCTCTAATAAAGATGTTGGGGCACCTCCAGCACAAATTATTTCTGATATGAAATCTGGCCTTGTACCTCCCGTAAATCAAGTGGAATTACCACTTGAAGTCACCAATCCATCCAATACGGGGCCCCATCCACACATGCTGTCTCAGTATGCTGGTCCTCTTCATATTTCCACTGGAGCATTGATGGAAGATGAGAAGGTAACACCTCTGGGCTTGTCTGATCAACTTCCCTCTGCTCAAGGACTGTTACAAGCCACTCCTACCCAATCACCTTTTTCTCTCCCAACACAGATACCTAATATTGGGACTCACGTTGTTATCAATCAGAAGCTCAGTGGTTTTGGCTTGCAAATGCATTTTCAGAGAGCGGTACCTATTGCAATGGACAGAGCTATCAAAGAGATAGTGAATAGTATTGTGCAGCGTAGTGTTTCCATAGCAACACAAACAACGAAGGAGCTTGTTTTAAAGGATTATGCTATGGAATCAGATGAGACGCGTATATTAAATGCTGCACACTTGATGGTTGCTAGTCTGGCTGGGAGTTTGGCTCATGTTACATGCAAAGAACCTTTACGGGGATCAATATCAAGTCAACTGAGGACTTCACTTCAGAATTTAAATATTGCAAATGAAATTTTGGAACAAGCTGTGCAACTTGTCACAAATGATAATCTTGATCTTGGTTGTGCAGTCATTGAACAGGCTGCTACTGATAAGGCAATAAACTCCATAGATGCTGAGATTGGTAACCAACTTTCTTTGAGAAGGAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATACAAACTTGTATACCCAAGGTTCTATGGGTGGTGTTCCAGAGCCCCTTCGTCCCAAGCCTGGTCAGTTGTCCCTCTCACAACAGCGTGTCTATGAGGACTTTGTTCGGCTTCCTTGGCAAAATCAGTCCAGCCAGAGTTCACATTCTATGTCTGCTGGTGTTTCTGTTCAGTCTGGAAATACTGGTCTCAATGGCACCAATGGTTCAGTATCAGGACAGATTAACCCTGGTTACTCTGTAAGCACAGGATATGAAGGGGTCTCTCGACCAATAGATGATATGGCAGAATCTAATTTGGCTCCACATTTTAGTGTTTCCTCAGTTCATATTAGAGCAGCTGACAGTGTTTCCCAGCATAGTTTGGAGAAAGACTCTGTTGCCTCATTTCCTTCATCTGCTTCCACCCCTGAGTTGCATACAATGGATTCTTCAGATGCTGTGAAAGAATCTGGAGCTCCTTCACAGCCTCTGGTTTCATCAGGTGCTGTGGAGCGCCTTGGAAGTAGCTTCTTGGAGCCTACTCTTAGTACAAGGGATGCCCTGGATAAATACCAAATTGTTGCACAAAAGTTGGAAGCTTTGGTCAACAATGATTCCAGGGAAGCAGAAATACAGGGGGTCATTTCTGAGGTTCCTGAGATCATACTCAGATGCGTTAGTCGAGATGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTACGACAATGCATCAAACAACATTCATGTCTGTGCTCATCTTGCAATCCTGACTGCCATTCGTGATGTTTGCAAGCTTGCTGTCAAGGAGCTTACTAGCTGGGTAATTTACTCGGAAGAAGAAAGGAAATTTAACAAAGATATTACTGTCGGTCTCATCCGCAGTGAATTGCTGAATCTTACCGAGTACAATGTTCATATGGCAAAACTTATTGACGGGGGAAGGAACAAGGCTGCTACTGAGTTCTCTATCTCTCTCCTTCAAACCCTGGTTGTTGAGGAACCTAAAGTTATTTCAGAACTTCACAATCTTGTTGATGCTTTGGCGAAGCTTGCTACAAAGCCTGGATACCCTGAATCATTACCACAGCTTGTTGAGATGATCAAGAATCCTGCTGCTAATACTGCTGCTCTATCTGCTAGTAATGCTGGAAAGGAGGATAAGGCAAGACAATCGAGAGATAATAAGGGTCCTGGTCTCCTAGCTGCAAACAGGGAAGAGTTAAATAGTGTAGATTCTGTTGAACCAGATCCTGCTGGATTCCGTGAGCAGGTTTCCATGTTGTTCACTGAATGGTATAGGATATGTGAACTTCCTGGGGCCAATGATACAGCTTCTACCCACTTCACCTTACAACTGCATCAGAATGGGTTGCTTAAGGGGGATGATGCAACAGATCGCTTTTTCAGATTGTTGATGGAACTTGCAGTTTCACATTGCTTATCTACTGAGGTGATCAATTCAGGGGCTCTACAATCTCCTCAACAGCTGCCGGCAATGTCATTTCTTGCAATTGATATTTATTCAAAGCTTGTCTTCTATATCTTAAAGAAGCTGCACATTGCTTTGTGGCAGATTCTGGCAGTTACTGTTAGATTCATTCTAAAGGAGGCAGAGGAAAAGAAGGCCTCTTTCAATCCAAGACCATTTTTCAGATTGTTCATCAACTGGCTTCTAGATCTCGGCTCACTTGAGCCTGTTACCGATGGTGCAAATCTCCAGATTTTGACTGCTTTTGCCAATGCATTTCATGCTTTGCAGCCCCTCAAAGTTCCTGCATTCAGTTTTGCATGGCTTGAGTTGATAAGTCATAGGAGCTTCATGCCAAAAATGCTAACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGCTGCTTGTAGATTTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTAGGAGACCCGGTTCGTGTTCTCTATAAAGGCACACTTAGGGTGCTATTAGTGCTACTTCACGACTTCCCAGAGTTCCTATGTGACTATCACTTTACCTTTTGTGATGTTATCCCTCCAAGTTGCATACAGATGCGAAATATCATTCTCAGTGCATTTCCGCGTAGTATGAGGCTACCGGATCCTTCCACTCCTAATTTGAAGATTGATTTGCTTCAAGAAATAACTCAATCGCCTCGAATTCTTTCGGAGGTTGATGCAGCACTTAAAGCAAAGCAGATGAAGGCTGATGTGGATGAATACCTTAAGACAAGGCAGCAAAGTTCTCCATTTTTGTCTGAACTGAAGGAGAAGCTGCTCCTCTCACCCAATGAAGCTGCCTCTGCGGGGACTCGTTACAATGTGCCATTGATCAACTCCCTTGTGCTGTATGTTGGAATGCAGTATGTTTGGGCTATTAACTTACAGGCAATCCAGCAACTCCAGGGACGAACGCCCCATGCACAATCAGCAGCAAATGCTTTCCCGTTGGCTGTATTTTCTGTTGGTGCTGCATTAGATATTTTCCAGACACTAATTGTGGACTTGGACACTGAAGGGCGCTACCTTTTCCTAAATGCTGTTGCTAACCAACTACGCTATCCAAATACTCACACACATTACTTTTCCTTCATTCTTCTTTACTTATTTGCGGAGTCAAACCAGGAAATTATCCAAGAACAAATTACAAGAGTCTTGTTAGAACGCCTTATTGTTAATCGGCCTCATCCCTGGGGTCTCCTCATTACTTTCATTGAGCTGATCAAGAATCCTAGGTATAATTTCTGGAACCGGTCTTTCATAAGATGCGCGCCAGAGATTGAAAAACTTTTTGAATCAGTCTCAAGATCTTGTGGAGGTCCAAAACCAGTGGATGAGAGTATGGTCTCTGGATGGGTCTGA 7290 0.4236 MTLDSVPSMANFSSTASNQIRFLLNSLNEVNFDSVFHHLSQVISFSFFLLIFVFFGRLIFNFTEFGTVGCILLLQTCLDHFSYVRRDTKDMQSEPILGAVFRNLLGKPNFSTVFSESMKNVEINESFLESFCNGLQLSLLEKIAISLALSDSENPDARLCGKNFCMAQIEELCANPGSLSCHDQIQNIIIFLKQSEGLSKHVDSFMQILSLVQFKDTPPFVLTPLLPDEMHEADILRWNMELFHDCGENDFDAILADIQKEMNMGDIVKELGYGCMVDVSQCKEILSLFLPLTDNMLSKLLGAIASTHAGLEDNQSTFLTFGAALGYNNLSELPPLNTWNIDVLIDTVKQLAPQTNWIRVIENLDHEGFFLPSEEAFSFLMSVYKHACKEPFPLHAICGSVWKNTEGQLSFLKYAVSAPPEMFTFAHSVRQLAFVDAINGHKLQNGHANHAWLCLELLDVLCQLAEKGHASIVRSILDYPLKHCPEVLLLGMAHINTTYNLLQREVSLIVFPMIVKSSVGSGMILHLWHVNPNLVLRGFMDSLNSDVDSITRIVDICQELKILSSVVEIIPSYYSIRLAAVASRKEFLDLVKWLSSNLTTYKDVFFEECLKFLKEVHFGGSRNLSGQSFHQSGAVLNVYTETTATFLKVLKSHTDLVTSRLLSEELEKLHISVIDSNPRLQNGGAADSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESSVKREKSIFECMIANLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHTDVDGVSHASVISNHNSTQASLGHVELGGSSVIQPGQPHLPMQLQQRRENPLDDRHKASGGSSADVKPLLSSLGPSSVVTPADTSSSNASSMLSSSPGFVRPSRGATSTRFGSALNIETLVAAAEKRETPIEAPGSEVQDKISFIINNISSANFEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGAPPAQIISDMKSGLVPPVNQVELPLEVTNPSNTGPHPHMLSQYAGPLHISTGALMEDEKVTPLGLSDQLPSAQGLLQATPTQSPFSLPTQIPNIGTHVVINQKLSGFGLQMHFQRAVPIAMDRAIKEIVNSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAINSIDAEIGNQLSLRRKHREGMGSTFFDTNLYTQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSAGVSVQSGNTGLNGTNGSVSGQINPGYSVSTGYEGVSRPIDDMAESNLAPHFSVSSVHIRAADSVSQHSLEKDSVASFPSSASTPELHTMDSSDAVKESGAPSQPLVSSGAVERLGSSFLEPTLSTRDALDKYQIVAQKLEALVNNDSREAEIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNASNNIHVCAHLAILTAIRDVCKLAVKELTSWVIYSEEERKFNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQTLVVEEPKVISELHNLVDALAKLATKPGYPESLPQLVEMIKNPAANTAALSASNAGKEDKARQSRDNKGPGLLAANREELNSVDSVEPDPAGFREQVSMLFTEWYRICELPGANDTASTHFTLQLHQNGLLKGDDATDRFFRLLMELAVSHCLSTEVINSGALQSPQQLPAMSFLAIDIYSKLVFYILKKLHIALWQILAVTVRFILKEAEEKKASFNPRPFFRLFINWLLDLGSLEPVTDGANLQILTAFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQSSPFLSELKEKLLLSPNEAASAGTRYNVPLINSLVLYVGMQYVWAINLQAIQQLQGRTPHAQSAANAFPLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWV. 2430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10081 2429 FunFam CCR4-NOT transcription complex subunit 1 2172 2409 - -
Seca4g10081 2429 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 509 651 IPR032194 -
Seca4g10081 2429 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 679 848 IPR032193 -
Seca4g10081 2429 MobiDBLite consensus disorder prediction 1852 1876 - -
Seca4g10081 2429 MobiDBLite consensus disorder prediction 1520 1553 - -
Seca4g10081 2429 FunFam Transcription regulator 684 852 - -
Seca4g10081 2429 FunFam Transcription regulator 1884 2175 - -
Seca4g10081 2429 Coils Coil 1413 1433 - -
Seca4g10081 2429 MobiDBLite consensus disorder prediction 1601 1637 - -
Seca4g10081 2429 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 984 1204 IPR032191 -
Seca4g10081 2429 Coils Coil 1659 1679 - -
Seca4g10081 2429 MobiDBLite consensus disorder prediction 897 960 - -
Seca4g10081 2429 Gene3D - 684 851 IPR038535 -
Seca4g10081 2429 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1327 1469 IPR024557 -
Seca4g10081 2429 Gene3D - 1884 2171 - -
Seca4g10081 2429 FunFam Ccr4-Not transcription complex subunit 957 1205 - -
Seca4g10081 2429 Gene3D - 2172 2409 - -
Seca4g10081 2429 MobiDBLite consensus disorder prediction 1601 1635 - -
Seca4g10081 2429 Pfam CCR4-Not complex component, Not1 2033 2410 IPR007196 -
Seca4g10081 2429 MobiDBLite consensus disorder prediction 918 960 - -
Seca4g10081 2429 Gene3D - 956 1206 - -
Seca4g10081 2429 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 62 2418 IPR040398 GO:0017148|GO:0030015
Seca4g10081 2429 CDD NOT1_connector 1653 1843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10081 Seca-Chr4 234120854 234145288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10081 K12604 - gmx:100783935 4190.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10081 4 234120854 234145288 Seca4g10081 4 234120854 234145288 ECH