Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10078 ATGAGGACAAAGCTAAGTTTTTTCTGGTGTGTTTGGATTTTCCTTTGTGGGTCTTGTGTGGGCAGGTTTGTAGTGGAAAAGAACAATTTGAAAATCACTTCTCCAAAATCATTAAGAGGTATATATGAATGTGCAATTGGAAATTTTGGGGTCCCCAAATATGGAGGAACCATGATTGGCACTGTGGTGTACCCCAAATATAATCGTAATGGATGCAGAAAGTTTGATGGTTCTGATACCTCATTGAGTTCCAAGCCCGGAAGCTTCCCCACCTTTGTTCTTGTTGATCGAGGAGATTGCTACTTCACTTTAAAGGCATGGAATGCTCAGAATGGTGGAGCAGCAGCTGTTCTTGTTGCAGATGATAGGATAGAACCATTGATCACCATGGACACTCCTGAAGAAGGCAATGGTGCAAATGATGATGATTATATTGAAAAGATTAGCATTCCTTCAGCCCTTATCAGCAAAACACTAGGGGAAAGCATCAAAACGGCTCTCTCTGGTGGGGCAATGGTTAATGTAAATCTTGATTGGAGAGAGGCTCTTCCACACCCTGATGACAGGGTTGAGTATGAGTTTTGGACAAGTAGCAATGAGGAGTGTGGACCAAAGTGTGAAAATGAAGTTAATTTTGTGAAGAGTTTTAAGGGGGCAGCTCAACTACTTGAGCAAAAAGGGTACACTAAGTTTACCCCTCACTATATAACATGGTATTGCCCAGAAGCATTTATCTTAAGCCAACAGTGCAAGTCTCAGTGTATAAATAATGGGAGGTACTGTGCACCAGATCCTGAGCAAGATTTCAGTAGAGGGTACGATGGCAAAGATGTTGTTATTCAAAACTTACGTCAAGCTTGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAACCTTGGAAATGGTGGGACTATGTGACTGACTTTTCAATCCGCTGCCCAATGAGAGAGAATAGGTACACTGAAGAATGCTCAGATCAAGTTATTAGATCACTTGGTGTTGATCTAAAGAAGATTCAAGATTGTATTGGGAATCCTCGTGCAGATGTTGAAAATCCTGTTCTTAATAAGGAACAGGATGCACAGATTGGCAAGGGCTCTCGTGGTGATGTTACTATACTTCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGCTGTCAAGACCAGCAGTACTCAAGGCACTATGTGCAAGTTTTCAAGAGACCACTGAGCCATCAATTTGTTTAACTCCAGGTTCTTATTTCATTTCCTTTTATTCTTCTTTGTACCAGATGGAAACAAACGAGTGTTTGAGAAACAATGGTGGTTGTTGGCAGGACAAATCTGCTAACATTACTGCATGCAGGGACACTTTCCGAGGGAGAGTATGTGAATGCCCTATTGTACAAAATGTGAAGTTTGTTGGTGATGGATATACCCACTGTGCAGCCACAGGAGCCTTGAGGTGTGCAATCAACAACGGAGGTTGTTGGAAAGGAGCCCAAGGTGGCAGGGCTTACTCTGCTTGTATCGATGACCACACAAAAGGTTGTAAGTGTCCACCTGGGTTCAGGGGTGATGGAGTCCACTCCTGTGAAGATGTGGATGAGTGCAGAGAGAAATTAGCCTGCCAGTGCCCAGAGTGCAACTGCAAAAATACCTGGGGGAGTTATGAATGCAAATGCAGTAACGGTTTGTTCTACATGCGAGAAAATGACATGTGTATTGGTAAATATTCGGCTTCAGTGTCTAGCGGGGGCTTTGTTTGGATGGTTATTCTGGTCTTGGCTATTGCTGGTGCCGGGGGATATGCATTTTACAAGTACAGAATCCGGACATATATGGATTCTGAGATAAGGGCAATTATGGCCCAATATATGCCCTTGGATAATCAACCGGAGAACTCTAATCAAGTTCAGCATGATGTTTAG 1914 0.4258 MRTKLSFFWCVWIFLCGSCVGRFVVEKNNLKITSPKSLRGIYECAIGNFGVPKYGGTMIGTVVYPKYNRNGCRKFDGSDTSLSSKPGSFPTFVLVDRGDCYFTLKAWNAQNGGAAAVLVADDRIEPLITMDTPEEGNGANDDDYIEKISIPSALISKTLGESIKTALSGGAMVNVNLDWREALPHPDDRVEYEFWTSSNEECGPKCENEVNFVKSFKGAAQLLEQKGYTKFTPHYITWYCPEAFILSQQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVIQNLRQACFFKVANESGKPWKWWDYVTDFSIRCPMRENRYTEECSDQVIRSLGVDLKKIQDCIGNPRADVENPVLNKEQDAQIGKGSRGDVTILPTLVINNRQYRGKLSRPAVLKALCASFQETTEPSICLTPGSYFISFYSSLYQMETNECLRNNGGCWQDKSANITACRDTFRGRVCECPIVQNVKFVGDGYTHCAATGALRCAINNGGCWKGAQGGRAYSACIDDHTKGCKCPPGFRGDGVHSCEDVDECREKLACQCPECNCKNTWGSYECKCSNGLFYMRENDMCIGKYSASVSSGGFVWMVILVLAIAGAGGYAFYKYRIRTYMDSEIRAIMAQYMPLDNQPENSNQVQHDV. 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10078 637 Pfam PA domain 60 163 IPR003137 -
Seca4g10078 637 ProSitePatterns Calcium-binding EGF-like domain signature. 528 554 IPR018097 GO:0005509
Seca4g10078 637 SMART egfca_6 528 570 IPR001881 GO:0005509
Seca4g10078 637 Gene3D - 20 186 - -
Seca4g10078 637 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 9 629 - -
Seca4g10078 637 Gene3D Laminin 423 467 - -
Seca4g10078 637 CDD EGF_CA 528 559 - -
Seca4g10078 637 SUPERFAMILY PA domain 92 173 IPR046450 -
Seca4g10078 637 FunFam vacuolar-sorting receptor 1 423 477 - -
Seca4g10078 637 Gene3D Laminin 483 570 - -
Seca4g10078 637 FunFam Vacuolar-sorting receptor 1 20 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10078 Seca-Chr4 234108300 234114067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10078 4 637 Miscellaneous Gene Families AT3G52850 68.553 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10078 - - gmx:100815266 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10078 4 234108300 234114067 Seca4g10078 4 234108300 234114067 ECH
Seca4g10078 4 234108300 234114067 Seca4g10078 4 234108300 234114067 PCT