Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09661 ATGGTTACTGAAGGAACCAAAAAGCCTCTGGTTTCAGTGCAGCCACCACCACCTCGCAAAATCAATGTTCAGAAATATGCAGAATCTCGTGCCCTTGAGCTCCAGAGTCTTCAATCTATCATAGAAAATAGAGTCAACAGCAATTATAGGTCTCAAAGGAACAAGAGAAGAAGGACAACCGCATTTGATAACCAAATTGCAAGAAAGGGATACAGAAGAAAGAGGCAGAAACTGGGAATAGTTGAGAAAGCCCATGCTGAATCAGTTTTGGAGAAGGACCAGATAAAGAAGCTCCCTCGGCGTGTTCGTCGGAGATATGAACTTAAGATAAACCCAGAGAATGGTTTTTGCACTTCTGGGGATGGAACCAAGAGGCTGAGAACTCATGTTTGGCATGCAAAGCGGTTTTTCATGACCAAGCTGTGGGGTTACTACCTTCCTCTGGGTCTTCAAGGAAGAGGGAAAGGATCGAGGGCACTCTTGAAAAGGCTCAAACAAGGGGTTCTTGTACATGATGCTAGCTATTATACTGCTGTTCAATTGGAGGGTCCAGAGGATTCATTAATTTCAATATTAAGAATGGTACTGGTGCCCTCTCCTGCAACGGTAACACATTCTGGAAATCATGATGACTCTGTCCTTTCTGGTGTAACCTATGGAACTGCAATGCTTTATCAAGTTGGAGCGCCAGTTTCTCAGCCAATTGCTCCTGTAACCTATATATGGCGACCAACTTTCCAGAGAAATATGAGTAGCGACCTGGATGGAAGAAATCACCATTCTTCTTTTAGACAACATGATATCAGTGATGAGCCAATCAAACATGATGTTGATTTATATGAAAAAACAGACAGAATGAAGCATGATTCTTCATTTAGACACCTTTGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATATGATAATCTAAAACTTGCCTGCCACAAAGAGATGGAAAAGAGGGGCATCTCAATTAATTGCTTTTCACTTGAGGGTCAACTTGCGAAATTAGAATTAATGGGATCAGGGACATTTCAACTTCTTCAAAAGATATTGCATCCTGTTAGAGGTATTTCAGAGAATCATTGGCAGTTGAAGAAACATGTGGCTATAGAAGAAAATTGTGTTTCTCAAAATAGAAAGTCATCCATACTGAAAAATGAGGATAATTTTTCTTCTCATGCTATGTTATCTCTTAACATTAAGGATCCTCGAGAGTTGCCGGTTAAAAGAACTGATATTCCCACTGAGCCAATTTCAACTGAGGCACTGAGTGATGCACAAGAAACTAATTACAAAGAGGTTGCTGATTTGGAAACAATGTTGGAGAAGAATAAAGATTTACCTTCATTGTCATGGTCAAAACTTGAAGACAGCCTGTGTAATACTGATGATCTATGGTATGCTACCACCAGAGGGTTGAGGCCCCCAGTGGAAGACTGTGTCCTTTCCAATGAGAAACACCGTGAACGTATGGTTAACTTCTGCCTTGATGATATCGATTCTGGGGAGGCAAACTCTTCAACCAAGGTGCAGTGCTCGAGATCTTGCCCTATTATGCTTTTAAAAAATGATATGAAGGAATTGAATATAGGATGGTCCATTATACTTCCCTTAAGTTGGGTTAAAGCCTTCTGGATTCCACTCATCTCTAATGGGGCACATGCAATAGGCTTGCGAGAGAAGCACTGGATCGCGTGTGAAATGGGCATGCCGTTTTTCCCTTCAGATTTCCCAGACTGTAAGGCATACACATGCTTTGTGGCAGCTAAAGCTGCTGCATCTAATAAAAAAGCACAACTTCGTCCTCCTTCTGTAAGGCATTTGAGAGTTCCCATCCTGCCCCCATGGGGTATTGTTCGCGCTACTTTTAACAAAGAGATTAGTGCAATGGAGACTCCTGATCTTTCAACTGGGGAAGATTTGAGCGGTGCTAATTCATTTTCAAATGGAAGTTCTAAAATTTCAAAATTGGACTATGAGAATAATTCATTTGATGGAACTGTAGCAAGAACAGGTTGTATGCTGACTACTTTCCTCAATGAAACCAAAACTGGTCAATTGCTATTGTTTCCTTATGCAGCTGATGGAAAGGCCAGAATCTCTAAGTTTATTAAGGGCGAACTAAAGCTTGATCTGAGGCATGGAAGCTCTGTCCTTTCTGACCATAGGCTATGTTTTGTAAGAATTCATCTTCACCCATTCAAGGAAGGCTTTTTTGAAGAAGGGGCAGTTATTTGTGCACCATGTCCTTCTGATATATCTTTATGGAGTTCAAGCTCAGAGAAAAGTGAAGAGGGACTTCAACTGTCTCAGTCTGCTACAAGATTATACTTCAAAGAGCATTCCTCCGGTAAATGGGGAATGGAGATACCAGATGATTCAGTTGCTAGAGAGTCTCACCGGTGGCCTATTGGCTTTGTCACGACAGCTTCTGTGCAGGGAAGCAAGAGGCTCGGAGCAGAGGGCTTTTGCGAGGCAGTTTTACTATCTCATTTAAGAGAGGAACAATGGAAGGAGATGCCTATGAAGCAGAGGAGGGAAATATATGTGCTTGTTAGGAATTTAAGATCTACAGCTTATAGACTTGCTCTCGCCTCTGTTGTCCTGGAATATCAGGAAAATGACATCGAGTTCTTGTAA 2646 0.4169 MVTEGTKKPLVSVQPPPPRKINVQKYAESRALELQSLQSIIENRVNSNYRSQRNKRRRTTAFDNQIARKGYRRKRQKLGIVEKAHAESVLEKDQIKKLPRRVRRRYELKINPENGFCTSGDGTKRLRTHVWHAKRFFMTKLWGYYLPLGLQGRGKGSRALLKRLKQGVLVHDASYYTAVQLEGPEDSLISILRMVLVPSPATVTHSGNHDDSVLSGVTYGTAMLYQVGAPVSQPIAPVTYIWRPTFQRNMSSDLDGRNHHSSFRQHDISDEPIKHDVDLYEKTDRMKHDSSFRHLWVWIHASAFEEGYDNLKLACHKEMEKRGISINCFSLEGQLAKLELMGSGTFQLLQKILHPVRGISENHWQLKKHVAIEENCVSQNRKSSILKNEDNFSSHAMLSLNIKDPRELPVKRTDIPTEPISTEALSDAQETNYKEVADLETMLEKNKDLPSLSWSKLEDSLCNTDDLWYATTRGLRPPVEDCVLSNEKHRERMVNFCLDDIDSGEANSSTKVQCSRSCPIMLLKNDMKELNIGWSIILPLSWVKAFWIPLISNGAHAIGLREKHWIACEMGMPFFPSDFPDCKAYTCFVAAKAAASNKKAQLRPPSVRHLRVPILPPWGIVRATFNKEISAMETPDLSTGEDLSGANSFSNGSSKISKLDYENNSFDGTVARTGCMLTTFLNETKTGQLLLFPYAADGKARISKFIKGELKLDLRHGSSVLSDHRLCFVRIHLHPFKEGFFEEGAVICAPCPSDISLWSSSSEKSEEGLQLSQSATRLYFKEHSSGKWGMEIPDDSVARESHRWPIGFVTTASVQGSKRLGAEGFCEAVLLSHLREEQWKEMPMKQRREIYVLVRNLRSTAYRLALASVVLEYQENDIEFL. 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09661 881 ProSitePatterns Neurotransmitter-gated ion-channels signature. 568 582 IPR018000 -
Seca4g09661 881 Pfam POPLD (NUC188) domain 533 608 IPR012590 -
Seca4g09661 881 PANTHER RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 16 869 IPR039182 GO:0000172|GO:0001682|GO:0005655
Seca4g09661 881 Pfam Ribonucleases P/MRP protein subunit POP1 126 183 IPR009723 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09661 Seca-Chr4 227259304 227266003 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09661 K01164 - gmx:100788705 1409.43