Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09511 ATGTTACAGAGAACATGGGAAAGGGCAAAGCTGGCAGCTACATTGGATCATGTTGTTGTGGCAACTGATGATGAAAAGATTGCTGACTGCTGTCGACAATTTGGAGCTGATGTCATAATGACATCAGAATCTTGCCGAAATGGTACTGAGCGCTGCAATGAAGCCCTACAGAAGCTTGGGAAAAAATATGATATTGTTGTAAACATCCAAGGTGATGAGCCACTTATTGAACCTGAAATAATTGATGGTGTTGTCAAAGCTTTACAGGCAGCTCCAGATGCAGTGTTCAGCACTGCAGTCACATCTTTAAAGCCTGAAGATGCACATGATCCAAATAGAGTGAAATGTGTGGTTGATAATCGTGGTTATGCCATCTATTTTTCACGAGGATTAATCCCATTCAACAAGTCAGGGAAGGTCAATCAACAGTTCCCTTATTTGCTTCATCTTGGGATTCAGAGCTATGATGCAAAGTTTCTAAAGATATACTCAGATCTTCAACCTACTCCATTGCAACTAGAGGAGGATTTGGAGCAGCTTAAAGTCCTTGAGAATGGCTATAAGATGAAGGTGATAAAAGTTAACCACGAGGCCCATGGTGTTGATGCTCCTGAAGATGTTGAAAAGATAGAATCTCTAATGCGTGAGAGGAACTTGTCTTGA 663 0.4118 MLQRTWERAKLAATLDHVVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQLKVLENGYKMKVIKVNHEAHGVDAPEDVEKIESLMRERNLS. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09511 220 CDD CMP-KDO-Synthetase 1 213 IPR004528 GO:0008690
Seca4g09511 220 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 218 IPR029044 -
Seca4g09511 220 FunFam 3-deoxy-manno-octulosonate cytidylyltransferase 1 215 - -
Seca4g09511 220 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 217 IPR029044 -
Seca4g09511 220 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 1 219 - -
Seca4g09511 220 Pfam Cytidylyltransferase 1 187 IPR003329 -
Seca4g09511 220 NCBIfam 3-deoxy-manno-octulosonate cytidylyltransferase 1 208 IPR004528 GO:0008690
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09511 Seca-Chr4 224843873 224847411 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09511 K00979 - gmx:100818593 429.869