Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09510 ATGGCCACCGTCCTCGAATCCCTCGCTGTCGTCCCTCGCCCTTCCTCTGCCTCCTTCTCTCCCATCGCTTCCCGCCGGAGCTCTGCCAAGTTGCCCCACTACGCAGGCCTCAAGCCCAGGCCCATCGTTGCCACTCGCTTCGCTGCTTCGCCATCTTCCAGAATCGTTACCCGCACTGCACGTGTCGTGTGCGAGGCTCAGGATACCGCTGTCGAAGTGGGTCCTATTACTGATGCACAATGGCAATCACTTGTCCTTGAATCTGAATCTCCTGTTTTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGAATGATCCACCCTATAATTGATGATCTGGCAAAGCAATATGCAGGGAAGCTCAAGTGTTACAAACTTAATACTGATGAGAGCCCTTCAACTGCTACTCGGTATGGGATTCGAAGTATCCCAACTGTTATGATCTTCAAGGATGGTGAGAAGAAAGATACAGTTATTGGTGCTGTGCCCAAGTCAACATTGACCACAAGCATAGAGAAATTCTTATGA 531 0.5122 MATVLESLAVVPRPSSASFSPIASRRSSAKLPHYAGLKPRPIVATRFAASPSSRIVTRTARVVCEAQDTAVEVGPITDAQWQSLVLESESPVLVEFWAPWCGPCRMIHPIIDDLAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKDGEKKDTVIGAVPKSTLTTSIEKFL. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09510 176 PRINTS Thioredoxin family signature 92 100 - -
Seca4g09510 176 PRINTS Thioredoxin family signature 140 151 - -
Seca4g09510 176 PRINTS Thioredoxin family signature 100 109 - -
Seca4g09510 176 ProSiteProfiles Thioredoxin domain profile. 53 176 IPR013766 -
Seca4g09510 176 PANTHER GEO12009P1 63 176 - -
Seca4g09510 176 FunFam Thioredoxin 67 176 - -
Seca4g09510 176 Gene3D Glutaredoxin 73 176 - -
Seca4g09510 176 ProSitePatterns Thioredoxin family active site. 93 111 IPR017937 -
Seca4g09510 176 CDD TRX_family 79 173 - -
Seca4g09510 176 Pfam Thioredoxin 75 173 IPR013766 -
Seca4g09510 176 NCBIfam thioredoxin 77 175 IPR005746 GO:0015035
Seca4g09510 176 SUPERFAMILY Thioredoxin-like 71 176 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09510 Seca-Chr4 224839760 224842085 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09510 K03671 - gmx:100818054 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09510 4 224839760 224842085 Seca4g09510 4 224839760 224842085 ECH