Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09490 ATGGCTCTCCAGACTACTTCCTTGGTTCCTTCATCTTTCTCCATTACTATAGAGGGAAAGTCTAGTGCATCACTCAAAAGCACCACCCTATTTGGTCTTTCATTACCAGACACACTCAAAGCTGACCTCAGCTCTTCAGCATTGACATGCAAGAGGGAATTCCAACAAAGGGTTGGTGCTGTGAGGGCTCAAACAGCAGCTACTACAACTCCATCAGTGATGAGGGCTGCACCAGGAGGCAAGAAAACATTGAGGAAAGGCAGTGTTGTGATCACTGGGGCTTCCTCTGGATTGGGACTTGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAATGGCACATAATAATGGCCTGCAGGGATTTCCTCAAAGCTGAAAGAGCTGCAAAATCTGCTGGCATTGCTAAGGAAAACTACACCATAATGCATTTAGACCTTGCCTCTCTTGAAAGTGTCCGTCAATTTGTTGATAACTTTAGGAGATCAGGAAGGCCACTAGATGTGCTTGTTTGTAATGCTGCAGTTTACTTACCAACTGCTAGGGAACCTACATTCACTGCTGAAGGCTTTGAACTCAGTGTTGGTATAAACCATTTGGGGCATTTTCTCCTTTCACGCCTATTGCTTGAGGATTTAAACAAATCTGATTACCCTTCAAAACGGATGATCATTGTTGGCTCAATCACAGGAAACACTAACACATTGGCTGGAAATGTGCCACCTAAGGCTAACCTTGGTGACTTGAGGGGACTGGCTGGAGGCTTGAATGGTCTAAACACTTCCTCTATGATTGATGGTGGAAACTTTGATGGTGCCAAGGCATATAAAGATAGCAAAGTGTGCAACATGCTCACTATGCAAGAATTCCACAGAAGATACCATGAGGAAACTGGAATCACATTTGCTTCACTTTATCCAGGTTGCATTGCCACAACAGGCTTGTTTAGAGAGCACATTCCCTTGTTCAGACTTCTTTTCCCTCCATTCCAAAAGTACATAACCAAAGGCTTTATCTCAGAAGATGAATCAGGAAAGAGGCTTGCACAGGTTGTGAGTGATCCGAGCCTAACAAAATCAGGGGTTTACTGGAGCTGGAACAAGGACTCTGCTTCATTTGAAAACCAGTTATCCCAAGAGGCCAGTGATGCAGATAAGGCTCGCAAGGTATGGGAGCTTAGTGAGAAACTGGTGGGTTTGGCCTAA 1200 0.4483 MALQTTSLVPSSFSITIEGKSSASLKSTTLFGLSLPDTLKADLSSSALTCKREFQQRVGAVRAQTAATTTPSVMRAAPGGKKTLRKGSVVITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGIAKENYTIMHLDLASLESVRQFVDNFRRSGRPLDVLVCNAAVYLPTAREPTFTAEGFELSVGINHLGHFLLSRLLLEDLNKSDYPSKRMIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNTSSMIDGGNFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFISEDESGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDADKARKVWELSEKLVGLA. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09490 399 CDD LPOR_like_SDR_c_like 86 398 - -
Seca4g09490 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
Seca4g09490 399 Gene3D - 80 399 - -
Seca4g09490 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Seca4g09490 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Seca4g09490 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Seca4g09490 399 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 399 IPR005979 GO:0016630
Seca4g09490 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 367 IPR036291 -
Seca4g09490 399 NCBIfam protochlorophyllide reductase 85 399 IPR005979 GO:0016630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09490 Seca-Chr4 224530549 224532733 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09490 K00218 - gmx:100804565 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09490 4 224530549 224532733 Seca4g09490 4 224530549 224532733 ECH