Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09486 ATGACCAAAGCCGTGGAGGACCACGAACTAGACGACGAAGAACACGAACCTCTCTGTTTCTACGACTCCAACGACCGTTTACTCTCTTCCTCTTCTTGCTCCACTTCCACTTCCGACGACGACACCCCCAAAAACGACACCACCACTAGTACTAAAAACGACACCTCCATTCCCAACTCTCCAACTCATGCACTCCCCAAATTCCCCTTCGCCACCATGTGCAAGTACGATGTTTGGATCTCCGAACCCTCCTCCGTCTCCGAACGCCGTAACCGCCTCCTCCGCCAATTCGGCCTCGCCGAACCGCCTTCCGCTCCAGCAATGTCCCGATCAATCTCCTCTCATAACCACGCGAGACGCACCGACACTTCTTGTTGCGGCGGCTCCGGCTCCGGAATATTCCGATCAAAGTCACACGGTTCGGCGGCTGATCGCATCGACTTGACGTCAGTGGAACCAAAAGAGAACTGCAGTTCACTTGTAAATAACAGTAATCATGGTGGTTCCAGTGGCAATGGTGCTTGTCTTGCTTCCCTTGGGAAGCCTGTTTTGGGGAAAATTTGCAAGAGGGTGAATAGAGGTGGTGGAATTGGGAGAGTGGAGGAGGGTTTGGAATGTAATGGGGTGGATAGAGTGGATGAACAAGTGTGTACGATAAGGGATCTGGATAACGGGAAAGAGTTTGTGGTGAAGGAGGTTAGGGAAGATGGGATGTGGAACAAGTTGAAGGAAGTGGGAACTGGGAGGCAGTTGACTATGGAAGAATTTGAGATGACTGTTGGGCACTCCCCCATTGTTCAAGAGCTAATGAGGAGGCAAAATGTGGAGGAGGGTAATGGGGATGGTGTAGATTTGGATGTAAATGGAGATACTGGTGGTGGTGGTGATGGTGATGGTGATAGTTTGAAGATGAAAAAGAAAGGGAGTTGGTTGAAGAGTATAAAGAGTGTTGCAAGTGCTGTGGCTGGTCATAAGGAGAGGCGGAGTGGTGATGAGAGGGATAACTCCTCGTCTGAGAAGGGTGGCCGGAGGTCGAGCTCTGCCACAGATGATAGCCAGGATGGTTCATTTCATGGGCCTGAGAGAGTGAGGGTGAGGCAGTATGGTAAGTCATGTAAGGAGCTTACAGGGCTTTATAAGAGCCAGGAGATACAGGCTCATGATGGATCCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATCTTGCTAGTGCAGGTGAGGATTGTGTGATCCATGTTTGGCAGGTTGTGGAGGCGGAGAGGAAGGGTGAGCTGCTGATGGAGAAACCAGAAGATGGGAACATGAATACGTTGTTTCTTGTGAATGGGTCGCCGGAACCAGCTCTGCTGTCCCCTTCCATGGACAATCATTCAGAGAAGAAGAGAAAGGGAAGGTCATCAGTTAGCAGAAAATCATTGAGCTTGGACCAATTAGCGGTGCCAGACACTGTGTTTGCACTCACTGAAAAACCCATTTGCTCCTTTAAAGGCCATCTCCATGATGTGCTTGACCTTTCTTGGTCCAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTGAAAATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACTCCTGATGGTCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACTTCTGAAAATAAGTTGCAACAGAAAAGTCAGATAACTTTTCAAGACAGGAAAAATAAATCAAATCGCAAGAAAATTACTGGCTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTCATCACATCTGCTGATTCACGGATTCGGGTTGTTGGTGGTGTTGATTTGGTTCATAAGTTTAAAGGGTTTCGGAATACAAATAGCCAAATTTCAGCCTGCTTTGCAGTAAACGGTAATTATGTTGTCTCAGCAAGTGAGGATTCTCATGTATACATCTGGAAAAATGAAGCTGATTGCAGACCTAACAGGAGTAAAGGTCTCACTGTCACAAGCTCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCGTTCCTTGGCCTGGTGTGGTTGATGCATGGGAGGTGCATGATATGTTCTGTGGAGAACAAACTGAGCTTGATGATAACTTGGATGGGGACTCATCAACCTATCATCCTCCGACCCCTGTTGAGGAAAATTTTGGTACTGAGGGTTGCAACAATAGTCCACTTCATGGAACCATTGCAAGTGCAACAAACAGTTATTTTTTTGATAGAATTTCCGCGACATGGCCAGAGGAAAAACAGCTGCAAACTGCAAGGGACCGAAGTCCTCGTGCCAGTGTGGATTTTTCTAACCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACAGCCGGCCTTCAAGGGGAAATTAAAACTTTCCAAAATTTTGGATTGCCTCTTCGTTTATAA 2586 0.466 MTKAVEDHELDDEEHEPLCFYDSNDRLLSSSSCSTSTSDDDTPKNDTTTSTKNDTSIPNSPTHALPKFPFATMCKYDVWISEPSSVSERRNRLLRQFGLAEPPSAPAMSRSISSHNHARRTDTSCCGGSGSGIFRSKSHGSAADRIDLTSVEPKENCSSLVNNSNHGGSSGNGACLASLGKPVLGKICKRVNRGGGIGRVEEGLECNGVDRVDEQVCTIRDLDNGKEFVVKEVREDGMWNKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEEGNGDGVDLDVNGDTGGGGDGDGDSLKMKKKGSWLKSIKSVASAVAGHKERRSGDERDNSSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTGLYKSQEIQAHDGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEAERKGELLMEKPEDGNMNTLFLVNGSPEPALLSPSMDNHSEKKRKGRSSVSRKSLSLDQLAVPDTVFALTEKPICSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQITFQDRKNKSNRKKITGFQFAPGSSSEVLITSADSRIRVVGGVDLVHKFKGFRNTNSQISACFAVNGNYVVSASEDSHVYIWKNEADCRPNRSKGLTVTSSYEHFHCKDVSVAVPWPGVVDAWEVHDMFCGEQTELDDNLDGDSSTYHPPTPVEENFGTEGCNNSPLHGTIASATNSYFFDRISATWPEEKQLQTARDRSPRASVDFSNQNMSAWGMVIVTAGLQGEIKTFQNFGLPLRL. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09486 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 570 IPR001680 GO:0005515
Seca4g09486 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 536 570 - -
Seca4g09486 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 530 - -
Seca4g09486 861 FunFam Transducin/WD40 repeat-like superfamily protein 342 445 - -
Seca4g09486 861 MobiDBLite consensus disorder prediction 451 470 - -
Seca4g09486 861 MobiDBLite consensus disorder prediction 101 120 - -
Seca4g09486 861 SUPERFAMILY WD40 repeat-like 378 706 IPR036322 GO:0005515
Seca4g09486 861 MobiDBLite consensus disorder prediction 28 63 - -
Seca4g09486 861 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Seca4g09486 861 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Seca4g09486 861 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Seca4g09486 861 Pfam WD domain, G-beta repeat 666 704 IPR001680 GO:0005515
Seca4g09486 861 Pfam WD domain, G-beta repeat 383 415 IPR001680 GO:0005515
Seca4g09486 861 Pfam WD domain, G-beta repeat 532 569 IPR001680 GO:0005515
Seca4g09486 861 Pfam WD domain, G-beta repeat 491 526 IPR001680 GO:0005515
Seca4g09486 861 FunFam WD repeat-containing protein 44 477 743 - -
Seca4g09486 861 MobiDBLite consensus disorder prediction 28 62 - -
Seca4g09486 861 MobiDBLite consensus disorder prediction 321 347 - -
Seca4g09486 861 PANTHER WD REPEAT DOMAIN 44 13 858 IPR040324 -
Seca4g09486 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 425 IPR001680 GO:0005515
Seca4g09486 861 MobiDBLite consensus disorder prediction 277 304 - -
Seca4g09486 861 MobiDBLite consensus disorder prediction 320 365 - -
Seca4g09486 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 417 - -
Seca4g09486 861 Gene3D - 370 730 IPR015943 GO:0005515
Seca4g09486 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 536 IPR001680 GO:0005515
Seca4g09486 861 SMART WD40_4 617 662 IPR001680 GO:0005515
Seca4g09486 861 SMART WD40_4 489 527 IPR001680 GO:0005515
Seca4g09486 861 SMART WD40_4 377 416 IPR001680 GO:0005515
Seca4g09486 861 SMART WD40_4 530 569 IPR001680 GO:0005515
Seca4g09486 861 SMART WD40_4 663 704 IPR001680 GO:0005515
Seca4g09486 861 SMART WD40_4 572 610 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09486 Seca-Chr4 224506921 224513476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09486 493 643 Miscellaneous Gene Families AT5G08390 24.026 1.59e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09486 K20241 - gmx:100806518 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09486 4 224506921 224513476 Seca4g09486 4 224506921 224513476 ECH