Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09308 ATGGCTACGAGAGTGGATCTGGATGGGAACCCCATTAAACCAATAACCATTTGCATGATTGGTGCTGGAGGCTTCATTGGTTCCCACCTTTGTGAGAAGCTTATGGTGGAGACGCCACACAAGGTGCTCGCTTTGGATGTCTACAATGACAAGATCAAGCACCTTTTGGAGCCTGACACGCTTCCTTGGGCTGGTCGAATCCAATTCCACCGCCTTAACATCAAGCATGATTCCAGGCTCGAGGGTCTCATTAAGATGGCAGATCTGACCATTAATCTCGCTGCTATATGCACTCCTGCGGATTACAATACGCGCCCTTTGGACACCATTTACAGCAATTTCATTGATGCGCTTCCTGTGGTGAAGTACTGTTCGGAAAACAACAAGCGTCTAATTCATTTTTCAACCTGTGAAGTGTACGGCAAAACGATTGGATGCTTTCTTCCAAAGGATAGCCCTCTTCGTCAGGATCCTGCATACTATGTTCTTAAGGAAGATGAGTCTCCTTGCATTTTTGGTCCAATTGAGAAGCAGAGATGGTCCTATGCCTGTGCAAAGCAGTTGATTGAGAGGCTGATTTACGCTGAGGGTGCTGAAAATGGCTTGGAGTTCACAATTGTGAGACCTTTTAACTGGATTGGACCAAGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATAACCTCCTCCGCAAAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGGACTTTTGTTTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGAAAACCCTGCCAGGGCTAATGGGCATATTTTTAATGTGGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTTATTCAAAGGTAAGTGGAGAAGCACCTTTGGAAAGTCCTACAATTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACCATAATTAATAAGCAGCTTGGTAGGTTTTCTCATTCATTCATTCACCTTACTTGA 1083 0.4441 MATRVDLDGNPIKPITICMIGAGGFIGSHLCEKLMVETPHKVLALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGCFLPKDSPLRQDPAYYVLKEDESPCIFGPIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRKEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTQVYSKVSGEAPLESPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGRFSHSFIHLT. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09308 360 Pfam NAD dependent epimerase/dehydratase family 17 287 IPR001509 -
Seca4g09308 360 Gene3D - 15 354 - -
Seca4g09308 360 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 16 353 - -
Seca4g09308 360 CDD Arna_like_SDR_e 16 350 IPR045869 GO:0016831
Seca4g09308 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 350 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09308 Seca-Chr4 220794459 220797604 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09308 K12449 - gmx:100792879 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09308 4 220794459 220797604 Seca4g09308 4 220794459 220797604 ECH
Seca4g09308 4 220794459 220797604 Seca4g09308 4 220794459 220797604 PCT