Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09275 ATGGCTCCGATTCCGTCCGAGAACGGCGTCGAAGGAGATGATGAGAGAGAAGAGGAGGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGACGATGAAGGAGGAGAAGAAGAAGACGAAGAGGAACCGAGGCTCAAGTATCAGAGAATGGGAGGAAGTATACCTTCGCTGCTAGCGAGTGATGGAGCGTCTTGCATCGCCGTTGCCGAACGGATGATCGCCCTCGGCACTCACGGCGGCGTCGTTTACATCCTCGATTTTCTTGGGAATCAGGTAATCTCATTGCAGGTGAAAGAGTTCTCTGCTCATGCTGCTGTTGTTAACGACCTTAGCTTTGATATAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCCGTTGTAATAAACAACCTTTTTTCTGACGAGAAAATGAAATTTGAGTACCATCGCCCCATGAAGGCAATTGCGTTGGACCCGGATTATGCGAGAAACACGTCTAGGAGATTTGTTGCTGGTGGTTTAGCAGGGAATTTGTATTTAAATTCAAAGAAATGGTTAGGCTATCGTGACCAGGTTTTGCACTCTGGAGAGGGACCGATACATGCAGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTGTAACATTTATCGAAAGGCCACGAGGTAGCCCTAGGCCCGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACACCCTTTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATAAGGACAAACCGTCATCAAGCAGTCAATGGGACTTACAGGCAAGTTCCTTTGTCTGGTATGACCCAGGTGGATATTGTGGCATCATTTCAAACTAGCTATTTCATCTCAGGAATTGCCCCCTTTGGTGATGCTTTGGTGGTTCTAGCATATATTCCTGGAGAAGAAGATGGAGAAAAAGCTTTTAGTAGCACTGCTCCTTCACGTCAGGGTAATGCACAAAGACCAGAAGTACGAGTGGTAACACGGAACAATGATGAACTTTCAACAGATGCCCTACCATTACATGGCTTTGAGCATTACAAGGCAAAAGACTATTCCCTTGCTCATGCTCCCTTCTCAGGCAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCGCTTTATTATATTGTATCCCCAAAGGATGTAGTTATTGCAAAGCCAAGGGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAAGGCCGGAGTGAACTACTTGATGAGGTGGGATCTAGATATCTTGATCATCTGATCGTGGAAAGAAAATATACCGAAGCAGCTTCTTTGTGCCCCAAGTTGCTTCGAGGATCAGCCTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTCCCTGTTTTAGTTCCCTACATGCCTACAGAAAGCCCTAGATTGCGTGATACTGCATATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCGTCCTTTCATAAGGATCTCTTATCCACTGTTAAATCCTGGCCATCTGTAATTTATTCTGTGTTGCCTGTTATTTCAGCCATTGAACCTCAGCTTAATACTTCATCCATGACTGATCCACTCAAGGAGGCATTAGCGGAGCTGTATGTAATTGATGGACAACATGAGAAGGCTTTCTCATTGTATGCTGATCTTATGAAACCAGAAGTATTTGACTTCATTGATAAACATAACCTACATGATGCAGTTCGTGAAAAGGTTGTTCAACTGATGATGCTTGATTGCAAGCGTGCTGTTCCTCTATTAATTCAAAATAAGGACTTGATAAGTCCACCTGAAGTTGTGAAGCAACTTCTAAATGCTGATATTAAGTGTGACTGCAGATATTTCTTACATTTATATCTCCATTCATTATTTGAAGTTAATCCACGCGCTGGGAAGGATTTTCATGATATGCAGGTAGAACTCTATGCAGACTATGATCCAAAGATGCTGCTACCTTTTCTCCGAAGCAGTCAACACTATACCCTTGAGAAGGCTTATGAAATTTGCATTAGGCGAGACCTAATGAGAGAGCAAGTCTTCATCCTTGGAAGGATGGGAAACTCAAAACAAGCCCTAGCTGTCATTATAAATAAATTAGGGGACATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATACTACTGGAGCACACAGTTGGAAACCTTGATCCCCTCTACATTGTAAATAAGGTTCCCAACGGGATGGAAATACCTCAGCTCAGGGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAGACATCACTTAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAACTTATTAATTAAGTATTACAATGAGGCAAAGCATGGAATTTATCTAAGTAATGAAGAAGACGAGATCCGAGTTAAAAGGAGTGATACTCATGCATCTCAGGTGTTTGAGAAATCCCCCAGTCTGAGAACAATGGAAGTGAAGTCGAAGACTAGGGGTAGTGGAAGATGTTGTATATGTTTTGATCCCTTTTCTATACAGAATGTATCAGTCATTGTTTTCTTTTGCTGTCATGCTTATCACACAACTTGTCTTATGGATTCTTCATACACTAGTAGTAGCAAGAAACAGATTGGAGCCACTTCCCAAGAGACAGAAGCATACGATGTTTACAATGGTTTCGTGGATAATAATGGTGATGATGATGATGATGAAGAGACAGAGGCGGGTGGCACTCGTATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2904 0.4335 MAPIPSENGVEGDDEREEEDEEEEEEEEEEDDEGGEEEDEEEPRLKYQRMGGSIPSLLASDGASCIAVAERMIALGTHGGVVYILDFLGNQVISLQVKEFSAHAAVVNDLSFDIEGEYIGSCSDDGSVVINNLFSDEKMKFEYHRPMKAIALDPDYARNTSRRFVAGGLAGNLYLNSKKWLGYRDQVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNRHQAVNGTYRQVPLSGMTQVDIVASFQTSYFISGIAPFGDALVVLAYIPGEEDGEKAFSSTAPSRQGNAQRPEVRVVTRNNDELSTDALPLHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYTEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTESPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSVLPVISAIEPQLNTSSMTDPLKEALAELYVIDGQHEKAFSLYADLMKPEVFDFIDKHNLHDAVREKVVQLMMLDCKRAVPLLIQNKDLISPPEVVKQLLNADIKCDCRYFLHLYLHSLFEVNPRAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIRRDLMREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGMEIPQLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYNEAKHGIYLSNEEDEIRVKRSDTHASQVFEKSPSLRTMEVKSKTRGSGRCCICFDPFSIQNVSVIVFFCCHAYHTTCLMDSSYTSSSKKQIGATSQETEAYDVYNGFVDNNGDDDDDEETEAGGTRMRCILCTTAAS. 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09275 967 Gene3D Tetratricopeptide repeat domain 560 836 IPR011990 GO:0005515
Seca4g09275 967 Pfam Region in Clathrin and VPS 619 762 IPR000547 GO:0006886|GO:0016192
Seca4g09275 967 FunFam Vacuolar protein sorting-associated protein 41 homolog 560 825 - -
Seca4g09275 967 SMART WD40_4 93 132 IPR001680 GO:0005515
Seca4g09275 967 SMART WD40_4 181 217 IPR001680 GO:0005515
Seca4g09275 967 SMART ring_2 880 962 IPR001841 -
Seca4g09275 967 CDD RING-H2_Vps8 878 912 - -
Seca4g09275 967 MobiDBLite consensus disorder prediction 11 40 - -
Seca4g09275 967 SUPERFAMILY WD40 repeat-like 60 272 IPR036322 GO:0005515
Seca4g09275 967 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 291 - -
Seca4g09275 967 Coils Coil 10 32 - -
Seca4g09275 967 SMART CLH_2 619 766 IPR000547 GO:0006886|GO:0016192
Seca4g09275 967 SUPERFAMILY RING/U-box 879 917 - -
Seca4g09275 967 Gene3D - 6 288 IPR015943 GO:0005515
Seca4g09275 967 MobiDBLite consensus disorder prediction 1 45 - -
Seca4g09275 967 PANTHER VACUOLAR PROTEIN SORTING VPS41 13 938 IPR045111 GO:0006623
Seca4g09275 967 PIRSF Vps41 1 921 IPR016902 GO:0034058|GO:0046907
Seca4g09275 967 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 619 766 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09275 Seca-Chr4 220186952 220199045 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09275 K20184 - gmx:100804340 1691.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09275 4 220186952 220199045 Seca4g09275 4 220186952 220199045 ECH