Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09248 ATGTCGCAGAAGCAGCAGCAGAAGAAGAAAAACGAAGGCGAAAACAGCAAGGATGAAGGGAAGAAGAAGAAAGAGGAGAAAGAAACGCCACCACCGACCACCGTGGTTTTGAAGGTTGACATGCATTGCGACGGTTGCGCTTCCAAAATCGTCCAATGCATTCGCGGTTTCGAAGGCGTGGAGAGTTTGAAAGCAGATAGAGATGCCGGAAAGTTGACCATTACCGGCAATGTTGACCCCGCAAAACTCAGGGACAAGCTCGCCCAAAAAATGAAGAAGAAAGTCGATCTCATCTCTCCGCTGCCTAACAAGGACAAGGAAAACAAGTCTCAGAATCAGAACAAGAATAAACCCGATGACAAAAAGCCCAAAGAGCCTCCGGTGACAACGGCGGTTTTGAAGGTGGCGCTGCATTGTCAGGGTTGCATTGAGAGGATTTGCAAGACAGTGTTGAAGACCAAAGGTGTTTATGACTTGGCGATAGATAAGGAGAAGGAGACGGTGACGGTGAAGGGAACGATGGACGTGAATGCATTGGTGGAGAAGTTGACAGATAGACTCAAGAGGAAGGTTGAGTTAGTCCCTCCCAAGAAGGAGAAGAAGGAAAGTGAGAAAGTGAAAGAGAAAGAGGATGATGCTGCTGAGAAGAAAGGAGACAGTGGTGGCGGCGCCAAGAAAAAGAAGCAGAAGGGTGGTGACGGCGGTGGCGGTGGAGGAGAAAATAAAAAGGATGAGGACGGCGGTGATAACGGCAAAGGGTCGAAAATGGAGCAGAGCAAGATGCAGGTTTTGGCACCTGCATGTGGATGTGCTTATGGTTATGGTTATGGCTATGGCGATGGTTGTCATTATGGGCAAGTCCAATTGCATGCTCCGCAGTTCTTCAGTGACGAAAATCCGAATGCTTGTTCTGTTATGTGA 921 0.4843 MSQKQQQKKKNEGENSKDEGKKKKEEKETPPPTTVVLKVDMHCDGCASKIVQCIRGFEGVESLKADRDAGKLTITGNVDPAKLRDKLAQKMKKKVDLISPLPNKDKENKSQNQNKNKPDDKKPKEPPVTTAVLKVALHCQGCIERICKTVLKTKGVYDLAIDKEKETVTVKGTMDVNALVEKLTDRLKRKVELVPPKKEKKESEKVKEKEDDAAEKKGDSGGGAKKKKQKGGDGGGGGGENKKDEDGGDNGKGSKMEQSKMQVLAPACGCAYGYGYGYGDGCHYGQVQLHAPQFFSDENPNACSVM. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09248 306 ProSiteProfiles Heavy-metal-associated domain profile. 128 191 IPR006121 GO:0046872
Seca4g09248 306 CDD HMA 36 95 IPR006121 GO:0046872
Seca4g09248 306 CDD HMA 132 185 IPR006121 GO:0046872
Seca4g09248 306 MobiDBLite consensus disorder prediction 194 253 - -
Seca4g09248 306 SUPERFAMILY HMA, heavy metal-associated domain 128 185 IPR036163 GO:0046872
Seca4g09248 306 MobiDBLite consensus disorder prediction 89 127 - -
Seca4g09248 306 Gene3D - 32 105 - -
Seca4g09248 306 Gene3D - 128 202 - -
Seca4g09248 306 MobiDBLite consensus disorder prediction 1 31 - -
Seca4g09248 306 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 12 306 IPR044594 GO:0046872
Seca4g09248 306 MobiDBLite consensus disorder prediction 194 258 - -
Seca4g09248 306 SUPERFAMILY HMA, heavy metal-associated domain 31 89 IPR036163 GO:0046872
Seca4g09248 306 Pfam Heavy-metal-associated domain 37 94 IPR006121 GO:0046872
Seca4g09248 306 Pfam Heavy-metal-associated domain 133 184 IPR006121 GO:0046872
Seca4g09248 306 MobiDBLite consensus disorder prediction 1 35 - -
Seca4g09248 306 ProSiteProfiles Heavy-metal-associated domain profile. 32 95 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09248 Seca-Chr4 219528507 219530488 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09248 - - cpap:110814507 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09248 4 219528507 219530488 Seca4g09248 4 219528507 219530488 ECH