Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09217 ATGGTTTTTGGTCGAAATTCAAGTGGGAGAAGTGGTGATAGCTTGGAAGGAATGCTTAACGATTATGTTGGTGGAAAGTCCAACAAATTGAAGGCTCAAAAAATTGCCTCTACCAACACTAAGCTTGTTGCAGCCCTCACATGTTTCCAATTCATGTTTGCAGCATATGCAACATTCCTATTGTACTACATCAGTCCTTCTATAGATTTACCAACCAAACCAGATTTTACATTGGCTACTCAAATTGCACAACAATGGAAGCAGCTTATGATCAGACCCCATGTGGTGAGTCACTACCAAGAAGCTTCTTCTTCTCTCATCAAAGAAGAAATTAATCCTATTACTCTATCTGAAGTCTGCCAGAATGAGAAGATAGATTTCATGCAGAAAAAGTCCAATGATGTTCAGATGATCAAGTTGAAGAGAGACCTCTATGAGGAGGTTCTGAACTTCCAGAAAGAGACCATTGGCACAGAAACTCTTGCTGAGCTAATGGCAATGAAATCCAAATGGGATTTGAGAGGTCCAAATAAACCAAAAATCACAGTTTTACTGAACCATTTCAAAAGAAAGACACTTTGTGCTCAGCTTGATTCCTTGCTCCAACAGACCCTACCAGTCCATCATGTTTGGGTGCTTTCATTTGGGAGCCCCAATGAGCTCTCTCTCAAGAGAATTGTGGATCACTATAATGATTCAAGGATCAGTTTCATAAGCTCAAGCTATGATTTTAAGTACTATGGAAGGTTTCAAATGGCTTTGCAGACAGAAGCTGATCTAGTGTACATTCTTGATGATGACATGATACCTGGTAGGAAAATGTTGCAGATTTTAGCACATGTGGCTGGAACAGACAAGTACATAAACTCTGTTCTTGGTAGCATAGGAAGGATATTGCCTTTTAGACAGAAGGATTTCACATTTCCAAGTTACAGAAAATTTCGGTCTAAAGAAGCAGGGCTATATTTGCCAGATCCTGCTTATGATATCACAGTTGATAAAATTGTGCAGGTGGATTTCTTATCTAGCTCGTGGTTTTTATCTGCTGAGCTTGTTAAGACACTCTTCATTGAGACTCCTTTTACCTTTGCAACTGGTGAAGATCTGCATCTCAGCTATCAGCTTCAGAAGTACAGAAATGCTGGCTCGTTTGTTCTTCCTGTTGACCCTAACGACAAGGAAACTTGGGGTGATAGTGAACACAGACTTGCCTATGTATCCGAAACCACTGTTATTTTCAAGGACATAGTTCAAGTCAGGGATGATCAATGGTGGAGAGCACTTTCTACTGGTTATGTGACCCAGTGGGCAGCAATGTATCCTCAAAAAATTGATGCACTCATTTATGCTCACTCTATTGATGAAGTGAAAGCACTTGCACCTCTTCTTGAAAAATTCAGGTCCACAGTTGGCAAGAAGGCCTACATTGTTGTCCCTGGAGGCAATTTCTGCCCTTGTGAAGATGCTGCTAAAGCACTGAATTGGCCTATATTGGTCTGCAAAGAGCGCCGTTTTAAGATATTTAATTTGGCTATTGGAGGACTCACTGGGGTATCAAACTCAGAGGTGCCAGTAATACAAGCAGTTTACTCCAGCATGAAGGGTTTGATCAAAATTCATAATCCCAGTGTGGTAATCACTGTAGCTGACATTGATCCTAATGTGAGAAAAGCACTAAAGATGGCATCAGAGAGTCATTCAAATGGCACAACTCTGGTTCTTTTACCAAGGGCTTCAGTGTCAAAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTGCCAAATTGGAACCGGATGAGGATCTCTGTGAACATCATTACCCAAAACCGAGCCAATTCACTAACAAGGCTTCTCAAATCTCTCAGCAATGCCTACTATGTTGGGGATGAAGTTCCCATTACTTTCAATATGGATAGTAAGGTAGATGAGGCAACTATAAGACTAGTAAGTTCATTTGAGTGGCCTCATGGACCAAAAACCCTGAGGAGGAGAATTATCCAAGGAGGGCTAATCAGAGCTGTGAGTGAGAGTTGGTATCCATCTTCTGATGATGACTTTGGGCTCCTACTTGAAGATGATATTGAAGTTTCTCCTTACTATTACCTATGGATCAAGTATGCACTCTTGTCTTACCATTATGACCCCCAGATTTCTCTCCCTGAGCTCTCTTCCATCTCCCTCTACACCCCAAGGTTGGTTGAAGTTGTCAAAGAAAGGCCTAAATGGAATGCCACAGAATTCTTCAAACACATCCATCCCAACACACCTTACCTTCACCAATTACCTTGCAGTTGGGGAGCAGTGTTCTTCCCTAAGCACTGGAGAGAATTCTATGTGTATATGAACATGAGGTTCACTGAGGATGCTAAGTCAAACCCTGTTCAAATTCCAAGGTCTAGAACAAATGGGTGGCAAGCTTCATGGAAGAAGTTCCTCATAGACATGATGTATCTTAGAGGCTATGTTAGTCTCTATCCAAATTTCCCAAACCAGGCAAGCTTCTCAACCAACCATATGGAACCAGGGGCACATATTAGTGCAAAAGATAATGTGGTGAGGCATGACAAACAGGACTTTGAGGTTCCATTGTTGAAGGAAGACTTCAGAAATTTGTTGCCAGCAATGAAATTGCCTCCAGCTTCAAAGTTGCCATCTCTGAATCTCTTCAATCAACCAGTTTCTCTCAAGGGTCTCAAGGCTGCTGGAGCTAAGTTGGGCCAAGATGTGCTTAGGTGTGACAATGCCACTGAAATAGTAATTGTGGATCATCATACTGGTCTGCCACACCGCTGCACCAAATTCTAA 2808 0.4174 MVFGRNSSGRSGDSLEGMLNDYVGGKSNKLKAQKIASTNTKLVAALTCFQFMFAAYATFLLYYISPSIDLPTKPDFTLATQIAQQWKQLMIRPHVVSHYQEASSSLIKEEINPITLSEVCQNEKIDFMQKKSNDVQMIKLKRDLYEEVLNFQKETIGTETLAELMAMKSKWDLRGPNKPKITVLLNHFKRKTLCAQLDSLLQQTLPVHHVWVLSFGSPNELSLKRIVDHYNDSRISFISSSYDFKYYGRFQMALQTEADLVYILDDDMIPGRKMLQILAHVAGTDKYINSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITVDKIVQVDFLSSSWFLSAELVKTLFIETPFTFATGEDLHLSYQLQKYRNAGSFVLPVDPNDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWRALSTGYVTQWAAMYPQKIDALIYAHSIDEVKALAPLLEKFRSTVGKKAYIVVPGGNFCPCEDAAKALNWPILVCKERRFKIFNLAIGGLTGVSNSEVPVIQAVYSSMKGLIKIHNPSVVITVADIDPNVRKALKMASESHSNGTTLVLLPRASVSKVLWMADLRSTALPNWNRMRISVNIITQNRANSLTRLLKSLSNAYYVGDEVPITFNMDSKVDEATIRLVSSFEWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDDFGLLLEDDIEVSPYYYLWIKYALLSYHYDPQISLPELSSISLYTPRLVEVVKERPKWNATEFFKHIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNMRFTEDAKSNPVQIPRSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPNQASFSTNHMEPGAHISAKDNVVRHDKQDFEVPLLKEDFRNLLPAMKLPPASKLPSLNLFNQPVSLKGLKAAGAKLGQDVLRCDNATEIVIVDHHTGLPHRCTKF. 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09217 935 SUPERFAMILY Nucleotide-diphospho-sugar transferases 175 378 IPR029044 -
Seca4g09217 935 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 601 850 IPR029044 -
Seca4g09217 935 SUPERFAMILY Nucleotide-diphospho-sugar transferases 599 790 IPR029044 -
Seca4g09217 935 CDD Glyco_tranf_GTA_type 191 293 - -
Seca4g09217 935 PANTHER OSJNBA0004B13.7 PROTEIN 283 926 - -
Seca4g09217 935 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 167 388 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09217 Seca-Chr4 218689766 218694313 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09217 - - gmx:100790938 1692.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09217 4 218689766 218694313 Seca4g09217 4 218689766 218694313 ECH