Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09198 ATGTTAAAGAAATTGCGTTCGGATTGTTCTTTGCAGGAGGATGAAAAGAAAGTGAATAACTTTCTGAAAATGGATAGGAGGGAAGGAGTGAATGATGGTTTTTCTAGACCTGGACCAAGTGATTCTCTTCTCCCTGGTCTAATCGATGATGTTGCACTGAATTGTCTTGCTTGGGTTAGTGGATCCGACTATGCCTCCCTATCATGTATCAATAAAAGTTACAGTAAGCTGATTAATAGTGGGTATCTATATGGGTTGAGGAAACAATTGGGAGCTGTGGAGCATTTGGTCTATTTGGTTTGTGATCCAAGAGGATGGGTGGCATTTGACCCTAAGATAAATAGGTGGATGGCATTACCTAAGATACCTTGTGATGAGTGTTTTAACCATGCAGACAAGGAATCCTTGGCTGTGGGGTGTGAGCTCTTGGTTTTTGGTCGAGAATTGATGGAGTTTGCCATTTGGAAGTATAGCTTGATTTGTCGCGGTTGGGTAAAGTGTCAGGAGATGAACCAACCTCGCTGTTTGTTTGGATCGAGCAGTCTTGGTTCGATAGCTATTGTAGCTGGTGGAAGTGATAAATATGGAAATGTTCTAAAATCAGCTGAGTTGTATGATTCTTCATCAGGTACATGGGAGCTTTTACCAAACATGCACACACCGCGTAGATTGTGCTCTGGTTTTTTTATGGATGGCAAATTCTACGTGATCGGTGGGATGTCAAGTACAACTGTTTCATTAACTTGTGGGGAGGAATATGATCCTAAGACGAGGAATTGGCGGAAAATAGAGGGTATGTATCCATATGTTAATGTTGGTGCTCAGGCACCTCCACTTGTAGCAGTTGTGGATAATCAGCTATATGCAGTTGAGCATCTAACTAACATGGTGAAGAAATATGACAAGGAAAAGAACACCTGGGATGAATTGGGAAGGCTTCCAGTTCGGGCTGATTCTTCTAATGGCTGGGGCCTTGCTTTCAAGGCTTGTGGAGATAAACTTTTGGTTGTGGGTGGACAAAGGGGTCCAGAAGGTGAAGCTATTGTGCTGAATTCATGGAGTCCTAAGTCAGGGGTCAGGAATGGCACTATAGATTGGAAGGTACTTGGTGTGAAGGAGCATGTTGGGGTGTTCGTGTATAATTGTGCTGTTATGGGCTGTTGA 1164 0.4304 MLKKLRSDCSLQEDEKKVNNFLKMDRREGVNDGFSRPGPSDSLLPGLIDDVALNCLAWVSGSDYASLSCINKSYSKLINSGYLYGLRKQLGAVEHLVYLVCDPRGWVAFDPKINRWMALPKIPCDECFNHADKESLAVGCELLVFGRELMEFAIWKYSLICRGWVKCQEMNQPRCLFGSSSLGSIAIVAGGSDKYGNVLKSAELYDSSSGTWELLPNMHTPRRLCSGFFMDGKFYVIGGMSSTTVSLTCGEEYDPKTRNWRKIEGMYPYVNVGAQAPPLVAVVDNQLYAVEHLTNMVKKYDKEKNTWDELGRLPVRADSSNGWGLAFKACGDKLLVVGGQRGPEGEAIVLNSWSPKSGVRNGTIDWKVLGVKEHVGVFVYNCAVMGC. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09198 387 SMART kelc_smart 233 277 IPR006652 GO:0005515
Seca4g09198 387 SMART kelc_smart 185 232 IPR006652 GO:0005515
Seca4g09198 387 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 40 387 - -
Seca4g09198 387 Gene3D - 95 369 IPR015915 GO:0005515
Seca4g09198 387 CDD F-box_AtAFR-like 43 87 - -
Seca4g09198 387 FunFam F-box/kelch-repeat protein SKIP11 89 371 - -
Seca4g09198 387 Pfam Kelch motif 173 218 IPR006652 GO:0005515
Seca4g09198 387 Pfam Kelch motif 221 266 IPR006652 GO:0005515
Seca4g09198 387 SUPERFAMILY Kelch motif 105 342 IPR015915 GO:0005515
Seca4g09198 387 SUPERFAMILY F-box domain 40 129 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09198 Seca-Chr4 218125808 218128160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09198 39 264 Miscellaneous Gene Families AT4G33900 27.876 9.49e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09198 - - gmx:100813839 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09198 4 218125808 218128160 Seca4g09198 4 218125808 218128160 ECH