Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g09119 | ATGGCGACACCATCTGTTCAGCCTGTAAACACCCCTAGGAAGAAAATGACAAAACAATTGACAGGAAAAAGGGATGATAGCCGTTTGCATTCTGCAGCAAGAGCAGGGAATCTGGCTGTTCTCAAGGATACCCTTACAAGTACTGAAGAGGATGCACTGCATGAATTATTGGCCAGGCAGAATCAAGATGGAGAAACAGCCCTTTATGTTGCTGCTGAATATGGTTATGTTGATGTAGTTAGGGAGATGATTCAATATTATGATCTTGCTGATGCTGGAATTAAAGCAAGAAATGGTTTTGATGCATTTCACATTGCAGCCAAACAAGGGGATATAGATATATTGAAGATCCTTATGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCCAATACCACAGCTTTGCACACAGCTGCAACACAAGGGCATACTGAGATAGTGAAATTCCTATTGGAAGAAGGGAGTAGCTTGGCTACCATTGCTAGAAGTAATGGGAAAACAGCTCTGCATTCTGCTTCAAGAAATGGACACTTGGAGGTTGTGAAAGCTCTTCTTGAGAAGGAGCCTGGGGTTGCAACAAGGACGGATAAGAAGGGCCAGACAGCACTTCACATGGCCGTGAAGGGTCAAAATCTTGAGGTGGTGGAGGAGTTGATAAAAGCAGATCCCTTATCAGTAAACATGGTTGATAGTAAGGGAAACACTGCATTGCATATAGCCACAAGGAAAGCCAGGGCTCAGATTGTAAAGATGCTTCTTGGACAGAAAGAAACAGATACACGTGCTGTAAATAGATCTGGTGAAACTGCAGTAGACACTGCTGAGAAAATGGGGAACCATGATGTTAAAGCCATTCTATTGGAACATGGTGTTCAGAGTGCTAAAGCCATAAAGCCACAGAGCACAAATGCTACAGCCCGTGAATTAAAACAAACAGTAAGTGACATAAAACATGAAGTGCATTACCAGTTGGAACACACTAGACAAACCAGAAAACGTGTTCAAGGAATTGCCAAACGTATCAACAAAATGCATACAGAAGGACTTAACAATGCTATCAACTCCACAACTGTGGTGGCAGTCCTAATTGCCACTGTTGCCTTTGCTGCTATTTTCACAGTCCCTGGCCAATTTGTTGATGACCCAAAAGATATTCCTCCAGGGATGTCCCTTGGTGAAGCAAATATAGCCCCACAAACTCCATTTATCATTTTCTTCGTCTTTGATTCCATTGCACTCTTCATTTCTCTGGCTGTGGTGGTGGTACAAACCTCAGTTGTGGTTATAGAAAGCAAAGCAAAAAAGCAGATGATGGCCATCATAAACAAGCTAATGTGGCTGGCTTGTGTTCTTATTTCCGTGGCCTTCTTGGCATTGTCATTTGTAGTGGTGGGAAAGGAGGAGAAGTGGCTGGCAATTGGGGTGACAATTATAGGGACAACCATAATGGCTACAACTTTGGGAACTATGTGTTATTGGGTCATTAGGCACCGCATTGAGGCCTCAAATTTGAGGAACATTCGGAAATCTTCATTGGAAAGCAGGTCAAAGTCTTTTTCAGTGTCTGCTTTTTCAGATTCTGAGCTACTTAACAATGAGTATAAGAAAATGTATGCGATTTAG | 1629 | 0.4254 | MATPSVQPVNTPRKKMTKQLTGKRDDSRLHSAARAGNLAVLKDTLTSTEEDALHELLARQNQDGETALYVAAEYGYVDVVREMIQYYDLADAGIKARNGFDAFHIAAKQGDIDILKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLEEGSSLATIARSNGKTALHSASRNGHLEVVKALLEKEPGVATRTDKKGQTALHMAVKGQNLEVVEELIKADPLSVNMVDSKGNTALHIATRKARAQIVKMLLGQKETDTRAVNRSGETAVDTAEKMGNHDVKAILLEHGVQSAKAIKPQSTNATARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKDIPPGMSLGEANIAPQTPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRNIRKSSLESRSKSFSVSAFSDSELLNNEYKKMYAI. | 543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat region circular profile. | 200 | 222 | - | - | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat region circular profile. | 132 | 159 | - | - | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat profile. | 200 | 222 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat region circular profile. | 98 | 120 | - | - | |
| Seca4g09119 | 542 | SMART | ANK_2a | 268 | 298 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | SMART | ANK_2a | 132 | 161 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | SMART | ANK_2a | 166 | 195 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | SMART | ANK_2a | 63 | 92 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | SMART | ANK_2a | 200 | 230 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | SMART | ANK_2a | 234 | 264 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | SMART | ANK_2a | 98 | 127 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat profile. | 166 | 198 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat profile. | 63 | 85 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | SUPERFAMILY | Ankyrin repeat | 29 | 293 | IPR036770 | - | |
| Seca4g09119 | 542 | Pfam | Domain of unknown function | 349 | 465 | IPR026961 | - | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat profile. | 234 | 255 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat profile. | 132 | 164 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat region circular profile. | 166 | 189 | - | - | |
| Seca4g09119 | 542 | Gene3D | - | 6 | 162 | IPR036770 | - | |
| Seca4g09119 | 542 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Seca4g09119 | 542 | Gene3D | - | 163 | 345 | IPR036770 | - | |
| Seca4g09119 | 542 | Pfam | Ankyrin repeats (3 copies) | 166 | 224 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | Pfam | Ankyrin repeats (3 copies) | 93 | 159 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat profile. | 98 | 130 | IPR002110 | GO:0005515 | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat region circular profile. | 63 | 85 | - | - | |
| Seca4g09119 | 542 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 12 | 522 | - | - | |
| Seca4g09119 | 542 | ProSiteProfiles | Ankyrin repeat region circular profile. | 234 | 255 | - | - | |
| Seca4g09119 | 542 | Pfam | Ankyrin repeat | 235 | 256 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g09119 | Seca-Chr4 | 216416850 | 216420954 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g09119 | 12 | 542 | Miscellaneous Gene Families | AT1G07710 | 76.648 | 0.0 | 786 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g09119 | - | - | gmx:100779230 | 909.442 |