Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08965 ATGGCCCGTACCAAGCAAACCGCTCGCAAGTCAACTGGAGGAAAGGCACCTCGGAAGCAGTTGGCAACAAAGGCTGCTTGTAAGTCTACTCCGACCACCGGCAGAGTGAAGAAGTCTCACCGTTTCAGGCCAAGAACGGTGGCTCTGAGGGAGATTAGAAAAATGGCTCGTACCAAGCAAACCGCTCGCAAGTCAACTGGAGGAAAGGCACCTCGGAAGCAGTTGGCAACAAAGGCTGCTCGTAAGTCTGCTCCGGCCACCGGCGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACGGTGGCTCTGAGGGAGATCAGGAAGTACCAGAAGAGCACAGAGCTTCTCATCCGAAAGCTTCCATTCCAAAGGCTCGTAAGAGAAATCGCTCAGGATTTCAAGACCGATCTCCGCTTTCAGAGCAGCGCCGTCTCTGCTCTCCAAGAAGCCGCAGAGGCTTATCTCGTTGGTCTCTTTGAGGACACTAACCTCTGCGCTATTCATGCCAAGAGAGTCACCATTATGCCCAAAGATATTCAACTTGCTCGCAGAATTAGGGGCGAGAGGGCCTAA 573 0.5358 MARTKQTARKSTGGKAPRKQLATKAACKSTPTTGRVKKSHRFRPRTVALREIRKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08965 190 FunFam Histone H3.3 107 190 - -
Seca4g08965 190 PANTHER HISTONE H3 1 54 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 Pfam Core histone H2A/H2B/H3/H4 55 186 IPR007125 GO:0003677
Seca4g08965 190 SUPERFAMILY Histone-fold 56 187 IPR009072 GO:0046982
Seca4g08965 190 ProSitePatterns Histone H3 signature 2. 121 129 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 MobiDBLite consensus disorder prediction 1 95 - -
Seca4g08965 190 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 ProSitePatterns Histone H3 signature 1. 69 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 PRINTS Histone H3 signature 88 109 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 PRINTS Histone H3 signature 134 152 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 PRINTS Histone H3 signature 112 129 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 PRINTS Histone H3 signature 57 71 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 PRINTS Histone H3 signature 168 189 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 PRINTS Histone H3 signature 152 168 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 PRINTS Histone H3 signature 71 85 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g08965 190 SUPERFAMILY Histone-fold 2 55 IPR009072 GO:0046982
Seca4g08965 190 FunFam Histone H3 56 104 - -
Seca4g08965 190 Gene3D Histone, subunit A 2 56 IPR009072 GO:0046982
Seca4g08965 190 Gene3D Histone, subunit A 57 190 IPR009072 GO:0046982
Seca4g08965 190 SMART h35 88 190 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08965 Seca-Chr4 213521596 213526557 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08965 - K11253 cud:121508556 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08965 4 213521596 213526557 Seca4g08965 4 213521596 213526557 ECH
Seca4g08965 4 213521596 213526557 Seca4g08965 4 213521596 213526557 PCT