Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08865 ATGAATTTACAACAAGGGCAGCCTAAATCCTCTAATGGATATGGCCGTCGAAAATCTGATCGGGAAGGGCCAACTAAGTCAGAGAATAAGATCCCATCAGGAAAATTAAATACCAGCAGATTGGCAAGTACAGTTGTCACAGGTGCAGTGACTGGCAGTAAGGGTAGTAGTTATGAGAATCTCTCACATGATCGACTAGTATATATGACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGGTCTATATACTCTGGAATATTTCATGCAACAAATACTGACAAAGATTTTGGAATTGTTTTAAAAATGGCTCGCTTGACAAAGGATGGTTCGTTACAAGGGGAGAAGTCTGGTGCAGAATTTGTCAGCAAGGCTCCTTCAAAGATTTTAATTATACCTGCCAAAGAACTTGTACAAATTATAGCAAAGGATGTTGCTGTTACTGGGGATGGCCTACCTAGTGAAGCTCACCAAGATATGCATCAGGAAATCATGGTTGATTCATTAATATCTCAATCTCGTCATGTTGATCTGGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGATGATCCACAATGCCCTGAACTGGAAAATATCTTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGACATTGTTTGGTGTAAAAAGCACATTCAATGAGGAACTGTATACAACAAAGCTTGAAAAAGGACCTCAAACTAGAGAACTAGAAAAGCAAGCTTTAAGAATAGCAAGAGAAATTGAGGGAGAGGATACCCAAGATCTACATCTTGCAGAGGAGAGAGGACTTCACATACATGAAGACTTTGATATTGATGAGGAAACTAGATTTTCTTCAGTCTATAGGGGTAAATGTGTTGATGATAGTGGGTATGAGGAAAATGAGGACATACTGCTGGAATCACACAATTCTGAAACTTTTGGTGGTATATTTGGTTCGGTCATTAAGAGGCCTGGTGAAATAGGCAGTGGAAAAGGCAATGATGGAGGTCGTACATTGGCAAATTCCTCCTCCATGGATCGCCCACAGTCATCTCAGTCAAGTAGTGGTGTGGATTTAAGACGCTCTGGTTCTTATGATCATGCTAAGCAGTTAGCATCTGAACTCCCTGCCAAAATCTACTCTTCTTCGGATGGGGAAAGCAGGATTCAGGAGAACTTGGTTAGTAATCTACATGGAGCCAATGGTAATACTAAGGAAGAAAACCTGATACAGCAAGCTGAGGATGTTCAACTGTCAAAATCTGAGGATTCACAGGCATCACACTACTTGAAGAAAGATGGCTCTGATAAAGGAGTATTATCTCCTAATGCCAGCTCCTATGCCCCTTCATCTCATATTTTGTCAAAATCTAATCAGAAGATGGGATCACCTGGGGATTTGACTGAGGCTTCAGCATCTAGTAAACCCAATGGGGAAACAAAGTCTGTAAATTCACGTGGGACATCACCTAGATCGGATTCTGTGGGAGCTGTGACTGCATCTTCTGGTCCTGGTTTATCTCCAAGTTCATCAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCATATGCAAAGGAATTCAAGCTCAACCCTAATGCAAAGAGTTTTATTCCATCTCCTGCTCGGCCTCCCACTCCTGTGTCTGATGGTTCCTTCTATTTTCCGAATAATGTAACTAGTGTACCAAATATGCCAGGCATGCCCATGGGTATTGGAATTGGACCTGCTTTTGCTGGGCCACAACCTGTCATATATAATCCACAGTTAGCCCAAATGCCATCTCAAGCATATTTTCATCCAAATGCGCTACAGTATGGACAGCTTCTTGGTCATCCTAGGCAAGCTATGTACATGCCGGGTTACCCTGAGATGCAATATAAAGGGCGGGACTATTGA 1917 0.4199 MNLQQGQPKSSNGYGRRKSDREGPTKSENKIPSGKLNTSRLASTVVTGAVTGSKGSSYENLSHDRLVYMTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIVLKMARLTKDGSLQGEKSGAEFVSKAPSKILIIPAKELVQIIAKDVAVTGDGLPSEAHQDMHQEIMVDSLISQSRHVDLGRELKPWVPDEDDPQCPELENIFDGHWNRGWDQFETNETLFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEDTQDLHLAEERGLHIHEDFDIDEETRFSSVYRGKCVDDSGYEENEDILLESHNSETFGGIFGSVIKRPGEIGSGKGNDGGRTLANSSSMDRPQSSQSSSGVDLRRSGSYDHAKQLASELPAKIYSSSDGESRIQENLVSNLHGANGNTKEENLIQQAEDVQLSKSEDSQASHYLKKDGSDKGVLSPNASSYAPSSHILSKSNQKMGSPGDLTEASASSKPNGETKSVNSRGTSPRSDSVGAVTASSGPGLSPSSSVGSLSSEKSTLNPYAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPNNVTSVPNMPGMPMGIGIGPAFAGPQPVIYNPQLAQMPSQAYFHPNALQYGQLLGHPRQAMYMPGYPEMQYKGRDY. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08865 638 Gene3D - 69 141 - -
Seca4g08865 638 Pfam Ataxin 2 SM domain 63 147 IPR025852 -
Seca4g08865 638 MobiDBLite consensus disorder prediction 329 370 - -
Seca4g08865 638 MobiDBLite consensus disorder prediction 1 38 - -
Seca4g08865 638 PANTHER ATAXIN 2-RELATED 41 631 IPR045117 GO:0003723
Seca4g08865 638 SMART LsmAD_2 223 294 IPR009604 -
Seca4g08865 638 MobiDBLite consensus disorder prediction 421 524 - -
Seca4g08865 638 MobiDBLite consensus disorder prediction 444 524 - -
Seca4g08865 638 MobiDBLite consensus disorder prediction 14 28 - -
Seca4g08865 638 MobiDBLite consensus disorder prediction 340 365 - -
Seca4g08865 638 Pfam LsmAD domain 223 293 IPR009604 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08865 Seca-Chr4 211530620 211541593 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08865 - - gmx:100812754 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08865 4 211530620 211541593 Seca4g08865 4 211530620 211541593 ECH