Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08858 ATGGAAGAGGATATGTCGCCACCATTTTGGATGCAAAACGGCGACGGCGATCGCCGGCGCCTCCACCGTTCATACTCCGTGTTCCTCAGCTCCGGCGCTCTTCTCATATTCCTTCTGGTGACAGCATTTGCGTTCATCTTCTTCATTGTTCCCACATTGCACTCTTTCACTTCCCACATTTTCAAACCCAATTCAGTGAAAAGGAGTTGGGATTCCCTCAATCTTGTGCTTGTTCTCTTTGCCATATTCTGCGGCTTCCTTAGCAGAAACAACACTGAAACCCCACGTTCCTACGAAGATCGAAGCTTCTCAAACACTCCACAAGAGTACACGAAACCAAACCCAGAAACACCACGTCCATGGTATGATGAGTACCCCGATCGAACCCCTTATTACAGGTTGAGGAGTTTCAACTCCTACCCTGATCTCCGGCAAGAGTCCGGCGATGAACGGTGGCGATTTTCTGATGACACACGTGTTAACGGTTACCGTGGATTGGACTTGGATTCCAAAGAAGAAGAACAGAGCATCAAAAACATAGAAGTGGACACATTTGAAACTCGTAGCAGCAGTGTTCGAAGAAACACCACCAAGAAAAAGTATCAACCAGAAAGTAAAATTTTTGAATCCGAGAGCTCACAAATGAGAGAGAAAAAGAATAAGAGAACAAGTGCAACTAAAGAGTTGTTAACATTAGTGAAGGGAAAGAAGAAGAAACAGAGACATAAGAGCGTTGAAAATTTACAGAGTATGCTAAATTCTGAACCTCACACTCGTCCTTCACAACCCCCACCATCACCGCCGCCACCGCCGTCGTCTTCTTCTTCTGGTTTTCATACTCTGTTCTCTTCAAAGAAAAGCAAACAAAAGAAACTTAACACTGTTTCGCCTTCGCCACCAAAGCATCATGTTTCATCCAAAACCAAACCGGTTGTTCATAGGAGTGTGGCTACTATCAAACCCAAGGAAGAGGATTTTAATTTTTATACTGTGGAAGAAAATGTGATTACTGGTAATGAGTCACCGTTGATTCCAATTCCTCCGCCACCGCCTCCACCGCCGCCGTTCAAGATGCCAGCGTGGAAGTTCCGGGTGCAGGGTGATTTTGTTAGGATAGATAGCATTAGTAGTTCAAGTAGTGGTTCACCAGATTTAGATGAAGTTTTGGACTCTGTTTCACCAACCAGTGTAGCAAGCCAGGGTAATAGTACCTCTCATGTTGGAGAATCTGAAATCTTATTGTTTTATCCGAGTCCTAGCCCTGATGTTGATAGCAAAGCTGATAATTTTATTGAGAGGTTCAGAGCTGGTTTAAGGATGGAGAAGATTAATTCCACGGAGGAGAAGCAGGGGATAGGGAGGTCTAATCTTCGCCCTTCAACAAAAGTAGAAACCAAAAAGAAAATGGACCAAGTTAAAGGTGCAAAATTGGTAAATGCCACCATGTTTTAA 1452 0.4408 MEEDMSPPFWMQNGDGDRRRLHRSYSVFLSSGALLIFLLVTAFAFIFFIVPTLHSFTSHIFKPNSVKRSWDSLNLVLVLFAIFCGFLSRNNTETPRSYEDRSFSNTPQEYTKPNPETPRPWYDEYPDRTPYYRLRSFNSYPDLRQESGDERWRFSDDTRVNGYRGLDLDSKEEEQSIKNIEVDTFETRSSSVRRNTTKKKYQPESKIFESESSQMREKKNKRTSATKELLTLVKGKKKKQRHKSVENLQSMLNSEPHTRPSQPPPSPPPPPSSSSSGFHTLFSSKKSKQKKLNTVSPSPPKHHVSSKTKPVVHRSVATIKPKEEDFNFYTVEENVITGNESPLIPIPPPPPPPPPFKMPAWKFRVQGDFVRIDSISSSSSGSPDLDEVLDSVSPTSVASQGNSTSHVGESEILLFYPSPSPDVDSKADNFIERFRAGLRMEKINSTEEKQGIGRSNLRPSTKVETKKKMDQVKGAKLVNATMF. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08858 483 MobiDBLite consensus disorder prediction 197 225 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 258 274 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 445 471 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 342 359 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 275 303 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 339 360 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 93 112 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 186 313 - -
Seca4g08858 483 PANTHER COTTON FIBER (DUF761) 6 455 - -
Seca4g08858 483 MobiDBLite consensus disorder prediction 93 122 - -
Seca4g08858 483 Pfam Cotton fibre expressed protein 421 448 IPR008480 -
Seca4g08858 483 MobiDBLite consensus disorder prediction 374 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08858 Seca-Chr4 211372073 211373524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08858 - - psat:127087309 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08858 4 211372073 211373524 Seca4g08858 4 211372073 211373524 ECH
Seca4g11718 4 257476011 257477561 Seca4g08858 4 211372073 211373524 PCT