Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08854 ATGTTCTACGCATCTCACATACTCAATCACTCCAGAAAGTTGAAGAATGCTTCAAATTTACTGCATCACGAGCATGCCATTTTGGTTCGTTGGTTTTCCGGTGGTACTCAACCAACTATCAATAGAAAACATGATATGTGGGAAACCCGATTCCGTGGTTATGAGTCTTCAACAAGAAAGTGTGTTTCTGAGACGGCTTATTGTACTACTATTCTTTCATTTGGTATACAGAAGAGAAACATCTCCAAGGCTACCATGAAAATGGGTTCAAGTGCTGAATCCTTATGCAACAATGAGATTTTGCAAAGTTTACAGGTACGGCCAAGGAGATGTTATTCATCATCTTCAGATCTTCCTCCACACCAGGAAATTGGAATGCCTTCACTTTCTCCAACAATGACTGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATTTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCAACAGTTGAAATGGAATGCATGGAAGAAGGTTACCTTGCCAAGATAATACGTGGGGATGGGACAAAAGAAATTAAAGTCGGTGAGGTGATTGCCATAACTGTTGAAGATGAGGATGATATTTCCAAGTTTAAAGATTACCAACCTCAAGCAACAGATTCTGGTGCTGCCACTGCCAAACAATCATCTCCCCCTCCACCAAAGAAAGAGAAGGCAGAGGAGCCTGCGCAAGAACCTGAGCCAAAGGTTTCCAAACCTAGTGTATCACCTTCATCTGGAAATCACATATTTGCTAGTCCTCTGGCTAGAAAAGTGGCTGAAGAGAAAAATGTCCCTCTCTCTAGCATTAAAGGAACAGGACCTGAAGGTCTCATTGTTAAGGGTGATATTGACGATTACTTGGCTTCTGATATTAAAGAAGTTTCTGCACTGTCAAAGGCCAAGGTTGCAACAGATGCACCACTGGATTACACTGACATTCCTCTCTCTCAGATAAGGAAGGTCACAGCATCTCGCCTATTATTATCAAAACAAACTATTCCTCATTATTATCTAACAGTAGATGCATGTGTTGACAAAATCATGAGTTTGCGAGCCCAACTCAATTCATTGCAAGAAGCATCTGGTGGGGCACGGATATCAGTTAATGACCTTGTCATCAAGGCTACTGCATTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAGATGATTATATTCGCCAATATCACAATGTGAATATTAATGTTGCAGTACAGACTGATCACGGACTCTTTGTTCCCGTCATCAAGGATGCAGACAAGAAAGGCCTCTCTACAATAGCTGAAGAGGTCAAACAACTGGCAAAGCCAAAGAAAACAGCTTGA 1359 0.415 MFYASHILNHSRKLKNASNLLHHEHAILVRWFSGGTQPTINRKHDMWETRFRGYESSTRKCVSETAYCTTILSFGIQKRNISKATMKMGSSAESLCNNEILQSLQVRPRRCYSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKISPGEVLCEVETDKATVEMECMEEGYLAKIIRGDGTKEIKVGEVIAITVEDEDDISKFKDYQPQATDSGAATAKQSSPPPPKKEKAEEPAQEPEPKVSKPSVSPSSGNHIFASPLARKVAEEKNVPLSSIKGTGPEGLIVKGDIDDYLASDIKEVSALSKAKVATDAPLDYTDIPLSQIRKVTASRLLLSKQTIPHYYLTVDACVDKIMSLRAQLNSLQEASGGARISVNDLVIKATALALRKVPQCNSSWADDYIRQYHNVNINVAVQTDHGLFVPVIKDADKKGLSTIAEEVKQLAKPKKTA. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08854 452 Gene3D - 251 298 IPR036625 GO:0016746
Seca4g08854 452 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 259 296 IPR004167 GO:0016746
Seca4g08854 452 MobiDBLite consensus disorder prediction 211 258 - -
Seca4g08854 452 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 252 297 IPR036625 GO:0016746
Seca4g08854 452 SUPERFAMILY CoA-dependent acyltransferases 317 447 - -
Seca4g08854 452 MobiDBLite consensus disorder prediction 112 132 - -
Seca4g08854 452 ProSiteProfiles Biotinyl/lipoyl domain profile. 121 197 IPR000089 -
Seca4g08854 452 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 81 448 IPR045257 GO:0006086|GO:0045254
Seca4g08854 452 Pfam e3 binding domain 258 292 IPR004167 GO:0016746
Seca4g08854 452 Gene3D - 116 222 - -
Seca4g08854 452 Coils Coil 349 369 - -
Seca4g08854 452 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 146 175 IPR003016 -
Seca4g08854 452 MobiDBLite consensus disorder prediction 228 242 - -
Seca4g08854 452 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 318 447 IPR001078 GO:0016746
Seca4g08854 452 SUPERFAMILY Single hybrid motif 120 214 IPR011053 -
Seca4g08854 452 CDD lipoyl_domain 122 195 - -
Seca4g08854 452 Gene3D - 304 451 IPR023213 -
Seca4g08854 452 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 117 221 - -
Seca4g08854 452 Pfam Biotin-requiring enzyme 123 195 IPR000089 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08854 Seca-Chr4 211304039 211310467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08854 1 450 Acyl Lipid Metabolism Gene Families AT1G54220 63.193 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08854 K00627 - gmx:100778218 649.047