Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08814 ATGGATGACACCATCAGCTCAACCGATTCAAATGAATGCTGTGAAGCTGGTGAGCAGAAAACTGGTTTTCAGGAATTTGGTCCTATTTTGAAGAAACCAAAAACACAAATTCTGCCACCTCAAAATGAAGACAATAGTGAAGTGGCAGAAAGCCAGGACAGATTCGGTGATATGCCCGATAGCCTTATCCTTCATATTTTGTCATTTATGGAAACAAAGGACGCAATTCGCACTTGTGTTTTATCAAAAAGGTGGAGGTATCTTTGGACTTCAATTCCATGCCTAAACTTCAGCAGTAAATCATTCCCCCGGCTGGTTGATTTCAAGAAATTTGTGTTGTGGGTCCTATCCCGTCGAGACTCTTCTCATGTCAGATCTCTCATTTACTACCGCTTTGGGGTAGATTATGCTACAGATCAATATCTATTGAATAAGGTTATTGAACATGCAGCATCACATGGTGTTCAAGAAGTCAGAATCAATCTTCGGGCGAAAACGTCTGGCAGCCCGCCTGTTGAAATTCCTTTGTCTTTATTTAATTGCCAATCCTTGAAAAGACTCGAGTTAAAAGACTGCCATCCTACAAATGTCTCATCACCTTTAAGTTGCAGATCGTTGGAAAGGTTGCATTTGGAACATTTCTCAATGTATCCTGCTTCAGCTGATTTGTCAAATTCACTTGCTAGTTTAGCAAAGGCTTTTGGTTTCTCAACATTGACAACTTTGCATCTCAGCAGCTTGACTCTGTGTTATACAGGAATTGACTGTCTGGGTCCATTTGTAAACTGTGTCAATTTAAAGAATCTTCACTTGAGTGAAATGTGCTTTAAGTCAGAAACGATCCCCAAGGATTTTGTGATATCTGCTCCCCAACTCAATAACTTGACTCTAATGTGCAACCGTTTTAAATGTAAACTTGTAGTTGCTGCACCACAGCTTATCAATTTCAGCTACTTATATTCTACTCCTTGTGCCTTCTTTGAGTTTAGTATCCCCTCTTTGGATGACTTGACCATTGATATCCGTGAACCACATGATCAAATGGAAAAGTCTCATCAGAAGCAGAGAGAAAAGGTTTCACATGGTTTGATCAATATGGTCCGGGGAGACCATGATGCTGAACTATCCTTCTGTACAGTTGAGGTAGTTACCTGTGGTGGGACTGCTGCCATGCTAAAGCAAGAATGTTCCGCTTTTAGTGAATTAAAGTCACTGAACTTGGGAGTGGGATCAACATACAAAATCTTCATTAGCAACCTTGACCATATAACTGCATACTTCCGCCATTGCTCTCAGCATGCAGACTTTGAGCTTCTGACTGTTTAG 1326 0.4065 MDDTISSTDSNECCEAGEQKTGFQEFGPILKKPKTQILPPQNEDNSEVAESQDRFGDMPDSLILHILSFMETKDAIRTCVLSKRWRYLWTSIPCLNFSSKSFPRLVDFKKFVLWVLSRRDSSHVRSLIYYRFGVDYATDQYLLNKVIEHAASHGVQEVRINLRAKTSGSPPVEIPLSLFNCQSLKRLELKDCHPTNVSSPLSCRSLERLHLEHFSMYPASADLSNSLASLAKAFGFSTLTTLHLSSLTLCYTGIDCLGPFVNCVNLKNLHLSEMCFKSETIPKDFVISAPQLNNLTLMCNRFKCKLVVAAPQLINFSYLYSTPCAFFEFSIPSLDDLTIDIREPHDQMEKSHQKQREKVSHGLINMVRGDHDAELSFCTVEVVTCGGTAAMLKQECSAFSELKSLNLGVGSTYKIFISNLDHITAYFRHCSQHADFELLTV. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08814 441 ProSiteProfiles F-box domain profile. 52 105 IPR001810 GO:0005515
Seca4g08814 441 SUPERFAMILY RNI-like 173 324 - -
Seca4g08814 441 Pfam F-box domain 57 93 IPR001810 GO:0005515
Seca4g08814 441 CDD F-box_AtFBL13-like 57 90 - -
Seca4g08814 441 PANTHER OS11G0201299 PROTEIN 240 409 - -
Seca4g08814 441 SMART fbox_2 58 98 IPR001810 GO:0005515
Seca4g08814 441 Gene3D - 42 95 - -
Seca4g08814 441 Gene3D Ribonuclease Inhibitor 143 343 IPR032675 -
Seca4g08814 441 SUPERFAMILY F-box domain 51 116 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08814 Seca-Chr4 210406580 210410893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08814 48 216 EF-hand Containing Proteins AT5G41840 28.723 6.07e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08814 - - vun:114167379 652.514