Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08758 ATGTTGCAGTCGGCCAATGGTGTAGGGATGAATCCTGCAATGGATGATATCAATTTGATTCAGCAAGCCCAAAGGCATCACTTGGTTGTAAGGGAGATTGGTGAAGAGATTGATTTAGAAATTGGACCTGGGGATGATGATCCTTCATTTAGTAACACTACCATAATTGGTGACCCGCCACAGGAATCTTCCACAGAAGAGCACAAGGAGAACAAGCAGATGGGGATGGTTTCTCAGCTTTCTAATGATGCTCAAGACATGTCAACGACCCAACCAGTGAAAAGGAAAAAGAAGGTTGTTAAAAGATGGAGAGAGGAATGGGCAGACACCTATAAATGGGCTTATGTTGATGTGAAAGATGGAACTGCAAGGATTTTTTGCTCTGTCTGTAGGGAGTTTGGCAGGAAGCACAGAAGAAATCCTTATGGGAATGAAGGCAGCCGTAACATGCAGATGAGTGCCCTAGAAGAACACAATAATAGTTTGCTTCACAAAGAGGCTCTTCGTCTCCAGGCAGCCTCCAAGGATAAAATTGTCATCGATAAGCCCATTTATGTAAAAGCTCTTGTGTCAAAAACAGCCGGATCAATTCTTGAAGCTACACTGAAAAGGGATCCTCATGAGGCTGAATTCCTTCAGACAGTTCAGGAAGCAGTTCATGCTCTTGAGAGAGTCATAGAAAAAAATTCCCATTATGTTAGCATCATGGAGCGCTTGTTGGAACCTGAACGAATGATTGTTTTCCGAGTTCCATGGGTGGATGATAGGGGTGAGACACATGTTAATCGTGGTTTCCGGATTCAATTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTATAGCCAAGTTCCTTGGTTTCCAACAGGCTTTAAAGAATGCCTTATCCCCTTATAAATTAGGAGGAGCATCTGGAGGAAGTGATTTTGATCCAAAAGGAAAAAGTGATAACGAGATCATGCGATTTTGCCAAAGTTTCATGAGTGAGATGTATCGGTACTTGGGTCCTGACAAGGACTTTCCCTCAGAGGAGATGGGTGTTGGTACTCGAGAAATGGGTTATCTTTTTGGACAGTATAGACGTCTAGCTGGTCAGTTTCAGGGGAGTTTTACAGGACCAAGGATATTTTGGTCTGGCTCTAGTCTGCGACCTGAAGCTACTGGTTATGGCCTGGTGTTTTTTGCCCAGCTCGTACTTACTGACATGAATAAAGAACTCAAAGGATTAAGATGTGTTGTGAGTGGTTCTGGAAAGATCGCAATGCATGTTTTAGAGAAGCTTATTGCTTATGGTGCTCTTCCCATCTCAGTATCAGACACAAGAGGATATTTGGTTGATGAAGATGGATTCGACTACATGAAAGTATCACTTCTAAGGGACATCAAAGCTCAACAAAGAAGTTTGAGAGACTATTCAAAGACTTATGCTCGGTCCAAATATTATGATGAAGCAAAACCCTGGAATGAAAGGTGTGATATTGCATTTGCTTGTGCTTCACAAAATGAAATAGACCAATCCGATGCCGTTAATTTGGTTAATTCAGGTTGTCGTATACTAGTAGAAGGTTCAAACATGCCCTGTACCCCTGAGGCATTTGATGTTCTAAGGAAAGCTGGTGTTCTCATTGCTCCTGCTATGGCTGCTGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAATTAAATCATGAATGCAACTTGATGCACTGGTCACCAGAGGACTTCGAATCTAAATTGCAGGAAGCAATGAAACAGACATATCAGAGAGCAATCAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGTCCTGAGTAA 1842 0.4229 MLQSANGVGMNPAMDDINLIQQAQRHHLVVREIGEEIDLEIGPGDDDPSFSNTTIIGDPPQESSTEEHKENKQMGMVSQLSNDAQDMSTTQPVKRKKKVVKRWREEWADTYKWAYVDVKDGTARIFCSVCREFGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQAASKDKIVIDKPIYVKALVSKTAGSILEATLKRDPHEAEFLQTVQEAVHALERVIEKNSHYVSIMERLLEPERMIVFRVPWVDDRGETHVNRGFRIQFNQSMGPCRGGIRFHPSMNLSIAKFLGFQQALKNALSPYKLGGASGGSDFDPKGKSDNEIMRFCQSFMSEMYRYLGPDKDFPSEEMGVGTREMGYLFGQYRRLAGQFQGSFTGPRIFWSGSSLRPEATGYGLVFFAQLVLTDMNKELKGLRCVVSGSGKIAMHVLEKLIAYGALPISVSDTRGYLVDEDGFDYMKVSLLRDIKAQQRSLRDYSKTYARSKYYDEAKPWNERCDIAFACASQNEIDQSDAVNLVNSGCRILVEGSNMPCTPEAFDVLRKAGVLIAPAMAAGAGGVVAGELELNHECNLMHWSPEDFESKLQEAMKQTYQRAIKAATDFGYQKESPE. 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08758 613 FunFam NADP-specific glutamate dehydrogenase 567 613 - -
Seca4g08758 613 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 242 369 IPR006097 GO:0006520|GO:0016491
Seca4g08758 613 FunFam Glutamate dehydrogenase 394 559 - -
Seca4g08758 613 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 388 606 IPR036291 -
Seca4g08758 613 Gene3D - 394 559 - -
Seca4g08758 613 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 196 381 IPR046346 -
Seca4g08758 613 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 420 440 IPR006095 GO:0006520|GO:0016491
Seca4g08758 613 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 378 400 IPR006095 GO:0006520|GO:0016491
Seca4g08758 613 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 557 568 IPR006095 GO:0006520|GO:0016491
Seca4g08758 613 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 299 313 IPR006095 GO:0006520|GO:0016491
Seca4g08758 613 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 142 613 - -
Seca4g08758 613 Gene3D Glutamate Dehydrogenase, chain A, domain 3 196 239 - -
Seca4g08758 613 Gene3D Leucine Dehydrogenase, chain A, domain 1 240 375 - -
Seca4g08758 613 MobiDBLite consensus disorder prediction 47 61 - -
Seca4g08758 613 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 388 605 IPR006096 GO:0006520|GO:0016491
Seca4g08758 613 MobiDBLite consensus disorder prediction 39 75 - -
Seca4g08758 613 FunFam Glutamate dehydrogenase 240 375 - -
Seca4g08758 613 SMART ELFV_dehydrog_3 389 609 IPR006096 GO:0006520|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08758 Seca-Chr4 208469318 208487317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08758 234 515 EF-hand Containing Proteins AT5G07440 28.622 1.16e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08758 K00262 - zju:107403966 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08758 4 208469318 208487317 Seca4g08758 4 208469318 208487317 ECH