Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08731 ATGCATGCCAAAATCACCTCAACGGTCTCTGGCTTTGTACTTGAGGATGTTCCTCACCTATCTGATTATATCTCTGACCTACCTACATATCCTGACCCATTACAAAACAATCCTTCCTATTCAGTTGTTAAGCAGTATTTTGTGAATGTGGATGATACAGTTGCACAACAGGCCAGTAATTTTTTACTTTTTGTTCTGATTTTCCTATCTCTGTCTACTATAGTAGTTGTACATAAAGAGAGTCCAAGAGGGATCCATTTTCGGCGTGCTGGCCCTGCTCAGAAGGTATATTTTGATTCAGAGGAAGTGCACGCTTGTATTGTCACATGTGGTGGTCTTTGTCCTGGCCTAAATACAGTCATAAGAGAAATAGTGTGTGGTTTATACCATATGTATGGGGTGCACAGAGTTCTGGGAATAGAGGGAGGATATACAGGTTTTTATTCTCGAAATACAGTTCCTTTAACACCAAAGGTTGTTAATGATATCCACAAACGTGGTGGAACCATACTTGGGACATCATATGGAGGCCATGATACCTCAAAGATTGTTGATAACATTCAGGATCGAGGCATTAATCAGGTTTATATACTCGGAGGGTATGGAACTCAAAAGGAGGCAGCTATGATCTTTGAGGAAATTAGAAGACGTGGCTTGAAAGTTTCAGTGGTCGGAATTCCAAAAACTATTGATAATGATATCCCTGTTATTGACAAGTCAATTGGTTTCGACACTGCTGTTGAAGAGGCTCAACGAGCTATCAATTCTGCCCATGTGGAAGCAGAGAGCACTGAGAATGGTATTGGTGTTGTAAAGTTAATGGGGCGTTATAGTGGATTAATAGCCATGTATGCAACTCTTGCCAGCCGAGATGTGGACTGTTGCTTGATTCCAGAATCACCCTTTTACCTTGAGGGTCCAGGTGGACTCTTGGAGTTCATTGAGAAAAGACTCAGAGAACAAGGGCACATGGTTATAGTCATAGCTGAAGGTGCAGGTCAGGAGCTTCTTCCTAACAACAACACATCTAATATCAATAAAGGGGATGCTTCTCCTGATGAACTACTTCAAGATGTTGGTCTGTGGTTATCCCAGAATATTAAGGATCACTTTGCAAAATGTCAAAAAATGGCTATAAATCTGAAGTACATTGATCCTACTTACATGATCCGTGCTATTCCAAGTAATGCATCTGATAATGTGTATTGCACCCTCCTTGCCCAAAGTTCTGTTCATGGTGCAATGGCTGGATACACAGGCTTCACAGTGGGACCAGTTAATGGCAGAAATTGTTACATTCCATTTCATCTGATAAATGAGGGAGAGAAGAGGGTTGTGATAACTGACAGGATGTGGGCAAGGTTATTATCTTCCACTCATCAGCCTAGCTTCTTGAATCCTCAAGAAATCAGAGAAAGAGAAGAACGAACGGAACACCAAACATCAGAAGGGTAG 1455 0.4137 MHAKITSTVSGFVLEDVPHLSDYISDLPTYPDPLQNNPSYSVVKQYFVNVDDTVAQQASNFLLFVLIFLSLSTIVVVHKESPRGIHFRRAGPAQKVYFDSEEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVHRVLGIEGGYTGFYSRNTVPLTPKVVNDIHKRGGTILGTSYGGHDTSKIVDNIQDRGINQVYILGGYGTQKEAAMIFEEIRRRGLKVSVVGIPKTIDNDIPVIDKSIGFDTAVEEAQRAINSAHVEAESTENGIGVVKLMGRYSGLIAMYATLASRDVDCCLIPESPFYLEGPGGLLEFIEKRLREQGHMVIVIAEGAGQELLPNNNTSNINKGDASPDELLQDVGLWLSQNIKDHFAKCQKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSSVHGAMAGYTGFTVGPVNGRNCYIPFHLINEGEKRVVITDRMWARLLSSTHQPSFLNPQEIREREERTEHQTSEG. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08731 484 PRINTS ATP-dependent phosphofructokinase family signature 242 260 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g08731 484 PRINTS ATP-dependent phosphofructokinase family signature 263 279 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g08731 484 PRINTS ATP-dependent phosphofructokinase family signature 191 207 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g08731 484 PRINTS ATP-dependent phosphofructokinase family signature 320 332 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g08731 484 PRINTS ATP-dependent phosphofructokinase family signature 107 126 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g08731 484 PRINTS ATP-dependent phosphofructokinase family signature 224 241 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g08731 484 FunFam Phosphofructokinase 243 402 - -
Seca4g08731 484 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 17 465 IPR012004 GO:0003872|GO:0005524|GO:0006096
Seca4g08731 484 FunFam ATP-dependent 6-phosphofructokinase 99 289 - -
Seca4g08731 484 Pfam Phosphofructokinase 106 411 IPR000023 GO:0003872|GO:0006096
Seca4g08731 484 SUPERFAMILY Phosphofructokinase 87 473 IPR035966 GO:0003872|GO:0006096
Seca4g08731 484 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 1 3 471 - -
Seca4g08731 484 PIRSF ATP_PFK_TP0108 12 469 IPR012004 GO:0003872|GO:0005524|GO:0006096
Seca4g08731 484 MobiDBLite consensus disorder prediction 464 484 - -
Seca4g08731 484 MobiDBLite consensus disorder prediction 467 484 - -
Seca4g08731 484 Gene3D - 99 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08731 Seca-Chr4 207906437 207912495 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08731 K00850 - gmx:100815278 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08731 4 207906437 207912495 Seca4g08731 4 207906437 207912495 PCT