Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08729 ATGTACAGAGCAGCAGCTTCACGTCTCAACCTTCTCAAGGGCAATGGGAGAACCTTAGGAGCCACTAGGTGTGCTACCTCAGGTGCAGTAGCTACAAGGCCTGTTTCAGGTGGCTTTTTCAGCTGGCTTACAGGGGAAACTTCCAGTACTCTTCCTCCTCTTGACATACCACTTGGAGGGGTTGCCCTCCCAGCTACACTGCCAGATTATGTTGAACCAAGCAAGACCAAGATCACAACTCTCTCCAATGGTCTCAAAATTGCATCAGAGACCTCACCAAACCCTGCAGCCTCAATAGGGTTATATATTGACAGTGGTTCCCTCTATGAGACACCATTTTCAAGCGGGGCAACTCACTTGCTGGAGAAATTGGCTTTCAAGAGCACAACAAACCGAAGTCACTTTCGTATTGTAAGGGAAATAGAAGCAATTGGTGGTAATGTAGGAGCCTCAGCCTCTCGGGAGCAAATGGGCTACACATTTGATGCTCTAAAAACCTATGTTCCACAAATGATTGAATTGCTAGTTGACTGTGTAAGAAACCCAGCCTTCTTGGATTGGGAGGTCAATGAAGAGCTTCAAAAGGTGAAAGCAGAGCTTGGAGAACTATCAAACAATCCCCAGGGCTTACTTTTGGAGGCAATTCACTCTGCTGGTTATTCTGGCGCATTGGCTAATCCACTTTTGGCTTCTGAATCAGCACTTCACAGATTAAATGGCTCCATTTTAGAGGAATTTGTTTTTGAAAATTATACTGCACCTAGGATGGTACTTGCCGCTTCTGGGGTTGAGCATGAAGAACTTTTATCTGTTGCTGAGCCACTCCTGTCTGATCTACCAAATGTTCCCCGTCCGGAGGAACCAAAATCTACCTATGTCGGAGGTGATTTCCGTCGTCAAGGTGAATCAGGGGGTGCACATGTAGCTATAGCCTTTGAGGTGCCTGGTGGCTGGCAAAAAGAGAAAGATGCTATTGTTTTGACTGTTTTACAGATGCTTATGGGAGGAGGTGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATATCTTCGTGTCTTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCAACAGTATCTTCAACAATACAGGATTGTTTGGCATATGCGCAAGCACCAGCTCTGATTTTGTGGCAAAAGCTGTGGATATAGCAGCCAAAGAATTAATAGCAATTGCGTCACCAGGACAAGTTTCACAAGTACAACTTAACCGTGCCAAAGAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCCAGAATGATTGCATCAGAGGATATAGGAAGGCAGATATTGACATACGGAGAAAGGAAGCCCGTGGAGCAGTTCTTGAAGACGGTTGATGAGATCACTTTGAATGATATCACAAAAATTGCTCAGAAGATTATTTCCTCACCTCTGACTATGGCATCCTATGGGGATGGTAATCATTAA 1476 0.4472 MYRAAASRLNLLKGNGRTLGATRCATSGAVATRPVSGGFFSWLTGETSSTLPPLDIPLGGVALPATLPDYVEPSKTKITTLSNGLKIASETSPNPAASIGLYIDSGSLYETPFSSGATHLLEKLAFKSTTNRSHFRIVREIEAIGGNVGASASREQMGYTFDALKTYVPQMIELLVDCVRNPAFLDWEVNEELQKVKAELGELSNNPQGLLLEAIHSAGYSGALANPLLASESALHRLNGSILEEFVFENYTAPRMVLAASGVEHEELLSVAEPLLSDLPNVPRPEEPKSTYVGGDFRRQGESGGAHVAIAFEVPGGWQKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGICASTSSDFVAKAVDIAAKELIAIASPGQVSQVQLNRAKESTKSAVLMNLESRMIASEDIGRQILTYGERKPVEQFLKTVDEITLNDITKIAQKIISSPLTMASYGDGNH. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08729 491 FunFam mitochondrial-processing peptidase subunit alpha 290 491 - -
Seca4g08729 491 SUPERFAMILY LuxS/MPP-like metallohydrolase 301 490 IPR011249 GO:0046872
Seca4g08729 491 SUPERFAMILY LuxS/MPP-like metallohydrolase 75 285 IPR011249 GO:0046872
Seca4g08729 491 Gene3D - 66 278 - -
Seca4g08729 491 FunFam Mitochondrial-processing peptidase subunit beta 66 281 - -
Seca4g08729 491 ProSitePatterns Insulinase family, zinc-binding region signature. 106 129 IPR001431 GO:0004222|GO:0006508
Seca4g08729 491 Pfam Peptidase M16 inactive domain 243 421 IPR007863 -
Seca4g08729 491 PANTHER METALLOPROTEASE 69 488 - -
Seca4g08729 491 Pfam Insulinase (Peptidase family M16) 87 230 IPR011765 -
Seca4g08729 491 Gene3D - 290 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08729 Seca-Chr4 207893819 207898558 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08729 K01412 - gmx:100794691 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08729 4 207893819 207898558 Seca4g08729 4 207893819 207898558 ECH
Seca4g08729 4 207893819 207898558 Seca4g08729 4 207893819 207898558 PCT