Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08654 ATGGTTCGAGCAATGGAACAAGACCAAGATACTTTCAGGTCCAAACTGTTCAATTTCAGAGGGATGTTTGAGAGCACAGGGAGGCATACTAAGAGCTTGAGTGTTGACACTGCTAGCACATTGGAACCTATAGAGGATGGTGCAGCTTCATCAAGAAGTCAAGGATCAAAACCTCTTATTGATTCAGATAAGGTTCCAAAGGCAAGGGTAATAAGCAAGGAGGAAATCGCAGCCAAGGAAGCCAAAGAAAAACTATTGCAAGTATCTTCTATGAATTTGATTGATATTCATGTTGGCTTTAATTCAGAGATGGAACAGATGAAGGAGAGATTTGCCAAACTTCTATTGGGTGAGGACATGTCTGGTGGAGGAAAAGGTGTTTCGTCTGCTTTGGCACTGTCAAATGCATTCACAAACATTGCTGCTTCAATTTTTGGTGAACAAAAGCGCCTAGAACCAATGCCAGCAGAAAGGAGAGCAAGATGGAGAAAAGAAATTGATTGGCTTCTAACAGTCACAGATTACATTGTTGAAATGGTTCCTTCACAACAAAAATCGAAGGATGGTACACAAATGGAGATTATGACAACGCGGCAACGAACAGATCTACACATGAATATCCCAGCCTTGCGAAAGCTTGATGCAATGCTTATTGAATGTCTGGATAACTTTAAGGATCAAAATGAGTTCTATTATGCAGATAAGTCAGATCAAGATTCAAACAGGAAAAATGATGATAAGTGGTGGATACCTACACCTAAGGTTCCCGCAGAAGGTCTATCTGATGTGGCTAGAAAATTTCTTCAGTATCAGAAAGATTGTGTAAATCAAGTGCTTAAAGCAGCCATGGCAATAAATGCTCAAGTTTTAACAGAAATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGAATGGAAGAGCAAGTCTAGGAGACTCAGCCTACAGGAGTATTACAGTTGAGTTTTTTGATCCTGATCAGTTCTTATCAACCATGGACTTATCATCAGAACATAAAATCCTTGATCTCAAGAATAGAATTGAAGCATCAATAGTGATTTGGAAGAGGAAGATGAACCAAAAAGATAGTAAATCAGCTTGGGGTTCTGCTGTGAGTATGGAAAAAAGAGAACTCTTTGAAGAGAGAGCAGAAACCATCTTACTTCTCTTGAAGCACCGTTTCCCTGGCATTCCTCAATCTGCATTGGATATAAGCAAAATCCAATTCAATAGGGATGTGGGGCAAGCTGTTCTTGAGAGCTATTCAAGAATACTGGAAAGTTTGGCCTTCACAGTACTTTCAAGAATAGATGATGTACTTCAAGCAGATTATCAAACTCAAAATCCAGCAGGAAAAAGGAGAATCTCAGTTTCAAAGCCAAGTCCTAGAGAAGAGACAGACAGGAGTAGTACAGAAATGCAAGGTTCAATGACACTATCAGATTTCATGGGTTGGGACTCTGATCAAGGTGAATCAGACATGAAGAAGGATCCCTTGGGGGTTTCAGATGACTTATGCAAAGACATTGATGCAAAGCAACAAAAACTTTCAAACGTAGTGACCAATAAGAAAGGGTCATACCTTGAGAACTTGGGAGTCATGAGAAGTCCAACATCACGCCATTAA 1629 0.3996 MVRAMEQDQDTFRSKLFNFRGMFESTGRHTKSLSVDTASTLEPIEDGAASSRSQGSKPLIDSDKVPKARVISKEEIAAKEAKEKLLQVSSMNLIDIHVGFNSEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNIAASIFGEQKRLEPMPAERRARWRKEIDWLLTVTDYIVEMVPSQQKSKDGTQMEIMTTRQRTDLHMNIPALRKLDAMLIECLDNFKDQNEFYYADKSDQDSNRKNDDKWWIPTPKVPAEGLSDVARKFLQYQKDCVNQVLKAAMAINAQVLTEMEIPESYIESLPKNGRASLGDSAYRSITVEFFDPDQFLSTMDLSSEHKILDLKNRIEASIVIWKRKMNQKDSKSAWGSAVSMEKRELFEERAETILLLLKHRFPGIPQSALDISKIQFNRDVGQAVLESYSRILESLAFTVLSRIDDVLQADYQTQNPAGKRRISVSKPSPREETDRSSTEMQGSMTLSDFMGWDSDQGESDMKKDPLGVSDDLCKDIDAKQQKLSNVVTNKKGSYLENLGVMRSPTSRH. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08654 542 FunFam Rop guanine nucleotide exchange factor 14 326 452 - -
Seca4g08654 542 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 102 448 IPR005512 GO:0005085
Seca4g08654 542 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 49 504 IPR038937 GO:0005085
Seca4g08654 542 ProSiteProfiles PRONE domain profile. 94 454 IPR005512 GO:0005085
Seca4g08654 542 Gene3D PRONE domain, subdomain 2 294 410 - -
Seca4g08654 542 Gene3D PRONE domain, subdomain 1 108 444 - -
Seca4g08654 542 MobiDBLite consensus disorder prediction 472 486 - -
Seca4g08654 542 MobiDBLite consensus disorder prediction 44 64 - -
Seca4g08654 542 FunFam Rop guanine nucleotide exchange factor 9 294 410 - -
Seca4g08654 542 FunFam Rop guanine nucleotide exchange factor 14 98 324 - -
Seca4g08654 542 MobiDBLite consensus disorder prediction 448 505 - -
Seca4g08654 542 MobiDBLite consensus disorder prediction 44 58 - -
Seca4g08654 542 MobiDBLite consensus disorder prediction 489 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08654 Seca-Chr4 205961458 205964637 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08654 - - gmx:100781787 879.396