Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08642 ATGTTATTAAAGGTCATAATCCTCGGAGATAGCGGGGTTGGTAAAACATCACTCATGAACCAGTATGTGAATCGTAAGTTTAGTAATCAGTATAAGGCTACCATTGGTGCCGATTTTCTTACCAAGGAAGTTCAATTTGAAGATAGATTGTTCACATTGCAGATCTGGGATACTGCTGGTCAAGAGAGGTTTCAGAGTCTTGGGGTGGCTTTCTACCGAGGTGCAGATTGCTGCGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGACAACCTTAACCACTGGCGGGAAGAATTTCTTATTCAGGTCATTAATAATTGTTGGCTTCTGAGTAATGCTAGTCCATCTGACCCTGAAAACTTCCCATTTGTGGTGTTGGGAAACAAAATAGACATTGATGGTGGGAATAGCCGAGTTGTTTCTGAGAAAAAAGCAAAGGCCTGGTGTGCTTCCAAGGGAAACATACCATACTTTGAGACCTCTGCAAAAGATGGATTTAATGTTGAAGCTGCTTTCCAGTGTATAACCAAAAATGCACTCAAGAATGAACCTGAAGAAGAAGTCTACATGCCTGACACAATTGATGTCGGTGGTGGTGGTGGACGGCAACAGAGGTCCACAGGCTGTGAATGTTGA 639 0.4194 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQVINNCWLLSNASPSDPENFPFVVLGNKIDIDGGNSRVVSEKKAKAWCASKGNIPYFETSAKDGFNVEAAFQCITKNALKNEPEEEVYMPDTIDVGGGGGRQQRSTGCEC. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08642 212 FunFam Ras-related protein Rab7 1 193 - -
Seca4g08642 212 CDD Rab7 3 186 - -
Seca4g08642 212 ProSiteProfiles small GTPase Rho family profile. 1 190 - -
Seca4g08642 212 PRINTS Transforming protein P21 ras signature 26 42 - -
Seca4g08642 212 PRINTS Transforming protein P21 ras signature 3 24 - -
Seca4g08642 212 PRINTS Transforming protein P21 ras signature 44 66 - -
Seca4g08642 212 PRINTS Transforming protein P21 ras signature 120 133 - -
Seca4g08642 212 PRINTS Transforming protein P21 ras signature 158 180 - -
Seca4g08642 212 SMART rab_sub_5 3 183 - -
Seca4g08642 212 SMART rho_sub_3 5 183 IPR001806 GO:0003924|GO:0005525
Seca4g08642 212 ProSiteProfiles small GTPase Ras family profile. 1 212 IPR001806 GO:0003924|GO:0005525
Seca4g08642 212 Pfam Ras family 4 181 IPR001806 GO:0003924|GO:0005525
Seca4g08642 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 189 IPR027417 -
Seca4g08642 212 Gene3D - 1 194 IPR027417 -
Seca4g08642 212 NCBIfam small GTP-binding protein domain 4 177 IPR005225 GO:0005525
Seca4g08642 212 PANTHER RAB FAMILY 2 210 - -
Seca4g08642 212 ProSiteProfiles small GTPase Rab1 family profile. 1 212 - -
Seca4g08642 212 SMART ran_sub_2 8 212 - -
Seca4g08642 212 SMART ras_sub_4 2 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08642 Seca-Chr4 205805333 205808640 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08642 K07897 - gmx:100783389 393.275