Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08629 ATGTTTGACGCGTTTTTGAAGCCGAAATTCTATTCAAAATGCAAATCGTACTTGAAGATAATAAAGACGAGGCTAGAGGCGATACGGAAGAAGAGAAACGCAGTACAGAAATTTCTTAAGAAAGATATCGCCGACCTTCTCAAAAGTTCCCTGGATTACAATGCATATGGAAGGGCTGAAGGGCTTTTGATCGAGCAAAATATGTCAGCTTGTTACGAACTCGTTGCAAAGTTTGTTGGATGCATATCGGATCATGTTCGAGACCTTTGTAAGCACAAGGATTGCCCTGATGAATGCAAGGAAGCTATACCTTCATTGATTTATGCTGCAGCAAGGTTTTCTGATCTGCCTGAACTACGCCACCTCAGAACGTTGTTTACAGAGAAATATGGGAATTCTCTTGAACCTTATATAAGTAAAGAGTTTGTAGAGAAGTTGAAGCAAAATCCTCCTTCCAAAGAAATGAAAATCCAGCTGTTGCATGATTTGGCGCAAGAGTTCTCTATTGAATGGGATAGCAAGGTTTTGGAGCAGAGACTTTACTCACCGCCTCTTTTACATGAAGAGAAGCCTAAACATGATCTTCAAAGTGATTATGGTGAAGTAAAATGGCAAAAGAACAATGATGTCCCCATCCCCAAAATAGACAAAATGGTTACTGGGGGCAAAGAAAGAGATGGAAGAGACTTGCATCCATCTAAAGGAAGTGAAGGAGATTCCCTATCTCCGGGAGGGAAGGATATCAGTGATGCCTTGGGGGGACTGCAAAGCAGCAGTGATGATGAAACTACTACTTACAATTCATCCCAGGATGGCCCAAAGGCTTGTTCAAGTTCATTAGAAAGTGTATCTGAGGATGAAGTAGAAATTAAGAGGCCATTTTCCTATAGGCTTGTTCCACCTCCTTATGTCAAAGAAAATTTTAACAAAAGTGAAAGCACTTTGAAGAAAACACCTGAAGCTCTACCAGAAAAGGAGTCAAATCATGATCATCGTGAACCAGTTGTTCAAAATAAGCCAATACCAAGATCAGTCAGGCGGAGACCTCTCAAACCACCACCTGACAATAACACTGCTTCAGATTCTAAAACTTGTGATCCTGCAAAGCTAGATTCAGGTGGAATGAGGTCAGAAAAAGCAAAGCAAAACCAGCGAACCGAACTTGCAGTTAATTGTGATTCAAGGGGTGAGGAAGAAAAGATAATAGATGGGCTATTAATGCATTACAGTAAGAAACAATCTCCTTATGAATCAGACACAGTGAAAGCATATACAACAGCTTGTCCTTCGCAGCAGCTAGAATATAATAATAATGGGCCAAACAGAAGGCATGCAAAATCAAATTCAGGTGGGCCCCCTGTGAGAGGGAAATCTCTTCCTCTTAAAGACACAACTTCAGTAGAAACATTAAAAGGGCATGGAAGAGCTACTTCCTTATTACCAGAAATGTTGAGGACAGCTGGGCATGTGCATCCTAGCCTACCAGATTACGATGATTTTACAGCTCGTCTTGCAGCTCTCAGGGGAAGATAA 1533 0.4116 MFDAFLKPKFYSKCKSYLKIIKTRLEAIRKKRNAVQKFLKKDIADLLKSSLDYNAYGRAEGLLIEQNMSACYELVAKFVGCISDHVRDLCKHKDCPDECKEAIPSLIYAAARFSDLPELRHLRTLFTEKYGNSLEPYISKEFVEKLKQNPPSKEMKIQLLHDLAQEFSIEWDSKVLEQRLYSPPLLHEEKPKHDLQSDYGEVKWQKNNDVPIPKIDKMVTGGKERDGRDLHPSKGSEGDSLSPGGKDISDALGGLQSSSDDETTTYNSSQDGPKACSSSLESVSEDEVEIKRPFSYRLVPPPYVKENFNKSESTLKKTPEALPEKESNHDHREPVVQNKPIPRSVRRRPLKPPPDNNTASDSKTCDPAKLDSGGMRSEKAKQNQRTELAVNCDSRGEEEKIIDGLLMHYSKKQSPYESDTVKAYTTACPSQQLEYNNNGPNRRHAKSNSGGPPVRGKSLPLKDTTSVETLKGHGRATSLLPEMLRTAGHVHPSLPDYDDFTARLAALRGR. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08629 510 MobiDBLite consensus disorder prediction 310 337 - -
Seca4g08629 510 MobiDBLite consensus disorder prediction 431 463 - -
Seca4g08629 510 MobiDBLite consensus disorder prediction 252 283 - -
Seca4g08629 510 MobiDBLite consensus disorder prediction 431 445 - -
Seca4g08629 510 Pfam Regulator of Vps4 activity in the MVB pathway 15 169 IPR005061 GO:0015031
Seca4g08629 510 MobiDBLite consensus disorder prediction 190 392 - -
Seca4g08629 510 FunFam Vacuolar protein sorting-associated protein IST1 5 179 - -
Seca4g08629 510 Gene3D - 4 179 IPR042277 -
Seca4g08629 510 PANTHER IST1 FAMILY MEMBER 13 508 IPR005061 GO:0015031
Seca4g08629 510 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08629 Seca-Chr4 205586739 205590169 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08629 - - ccaj:109788495 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08629 4 205586739 205590169 Seca4g08629 4 205586739 205590169 ECH