Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08564 ATGCCTTCACTCTCCGAAGCCTACCGAGGCAACCCAGTCCACGTACTTCACCACAAACACCCTGACTTCAACTCCTTACAAGAACTCCCTGAATCATACGCTTGGTCGACAACACACGTGGACGATCATGATCACACTTCCAATAATTCTATGAAGGAGAGTGTCCCCGTTATTGATCTCAATGACCCAAATGCTTCTAAACTCATAGGACATGCATGCAAGACATGGGGTGTCTACCAAGTTGTAAACCATGGCATACCCATAAGTCTCCTTGATGACATTCATTGGCTTGCCCAAACACTCTTCTCTCTTCCTTCTCATCAAAAACTCAAAGCTGCTCGTTCCCCTGATGGAGTTTCTGGCTATGGACTCGCTCGTATCTCATCTTTCTTCCCCAAACTCATGTGGTCTGAAGGCTTCACAATTCTTGGATCCCCTCTTGAGCATTTCCAAAAACTCTGGTCTCAAGATTACGACAAATACTGGCTCCTCTATATTGGGGGGTTTTGTCTTTTCAGTGATATTGTAGTGCAATATGATGAAACCATGAAAAAGCTAGCGGGAAAGCTAATGTGGCTTATGTTGGAGTCTCTGGGTATAACAAAGGAAGATCTCAAATGGGCCGGGTCAAAGGGCCAATTTGAAAAGGCTTGTGCTGCCATGCAATTGAACTCATACCCGAGTTGTCCGGATCCGGATCGGGCCATGGGTCTCGCACCGCACACCGACTCGACCCTTCTCACCGTTCTTTACCAGAACAACATTAGCGGGTTACAGGTCCAACGGGATGGATCCGGGTGGGTGACGGTGCCGCCACTCCCCGGCGCGTTGGTGATCAATGTTGGCGACCTCCTCCACATTTTGTCGAACGGGTTGTACCCGAGTGTGCTCCATCGGGTTTTAGTGAACCGGACCCGTCAACGGTTTTCAGTTGCCTATCTATATGGGCCCCAGCCCAATGTGGAGATCTGTCCACATGCAAAACTAGTAGGCCCAACACAGCCTCCACTTTATCGGTCAGTGACTTGGAATGAGTACCTTGGCACAAAAGCAAAACATTTCAACAAGGCACTCTCATCAGTTCGGGTTTGTACACCTATTAACGGTTTGTTTGATGTAAACGAGTCTCACAAAAAAGTAGTAGCGTGCAAGTGGGCTAGATAG 1164 0.4811 MPSLSEAYRGNPVHVLHHKHPDFNSLQELPESYAWSTTHVDDHDHTSNNSMKESVPVIDLNDPNASKLIGHACKTWGVYQVVNHGIPISLLDDIHWLAQTLFSLPSHQKLKAARSPDGVSGYGLARISSFFPKLMWSEGFTILGSPLEHFQKLWSQDYDKYWLLYIGGFCLFSDIVVQYDETMKKLAGKLMWLMLESLGITKEDLKWAGSKGQFEKACAAMQLNSYPSCPDPDRAMGLAPHTDSTLLTVLYQNNISGLQVQRDGSGWVTVPPLPGALVINVGDLLHILSNGLYPSVLHRVLVNRTRQRFSVAYLYGPQPNVEICPHAKLVGPTQPPLYRSVTWNEYLGTKAKHFNKALSSVRVCTPINGLFDVNESHKKVVACKWAR. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08564 387 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 216 317 IPR005123 -
Seca4g08564 387 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 55 347 - -
Seca4g08564 387 Pfam 2OG-Fe(II) oxygenase superfamily 220 317 IPR044861 -
Seca4g08564 387 Gene3D - 18 348 IPR027443 -
Seca4g08564 387 FunFam Gibberellin 3-beta-dioxygenase 1 17 349 - -
Seca4g08564 387 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 145 IPR026992 -
Seca4g08564 387 SUPERFAMILY Clavaminate synthase-like 15 354 - -
Seca4g08564 387 PRINTS Isopenicillin N synthase signature 69 86 - -
Seca4g08564 387 PRINTS Isopenicillin N synthase signature 241 262 - -
Seca4g08564 387 PRINTS Isopenicillin N synthase signature 277 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08564 Seca-Chr4 204160354 204162210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08564 55 358 Glycosyltransferase AT5G59530 30.938 1.37e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08564 K04124 - gmx:100798572 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08564 4 204160354 204162210 Seca4g08564 4 204160354 204162210 ECH