Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08509 ATGAGCAAGCCAGGGGACTGGAACTGCAGGTCATGCCAGCACCTGAACTTTCAAAGGCGTGATTCATGCCAACGATGTGGGGACTCAAAATATGGAGATGGGGATGATTATGGTGCATTTGGCATAGTAAAAGGAGGATCTTCATTTGGATTCAGTGGCTCAGTTGTTCGCCCTGGTGATTGGTATTGTGATGTAGCTAACTGTGGTGCACATAACTTTGCTAGCCGTTCAAACTGCTTCAAGTGTGGTGCTTTCAAGGATGACTTAGGAGGAGGAGGAGGATATAATAGTGACATGTCACGCTCAAGAGGTTTTGGTGGCAGTGGTGGGAGACCTGGATGGAGGTCTGGTGACTGGATATGCAACAGATCAGGATGCAATGAGCACAACTTTGCTAGCAGAATGGAATGTTTTAAATGCTGTGCTCCAAGGGACATGTACTAG 444 0.4707 MSKPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDGDDYGAFGIVKGGSSFGFSGSVVRPGDWYCDVANCGAHNFASRSNCFKCGAFKDDLGGGGGYNSDMSRSRGFGGSGGRPGWRSGDWICNRSGCNEHNFASRMECFKCCAPRDMY. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08509 147 FunFam Ran-binding zinc finger protein 51 88 - -
Seca4g08509 147 Pfam Zn-finger in Ran binding protein and others 57 84 IPR001876 -
Seca4g08509 147 Pfam Zn-finger in Ran binding protein and others 115 144 IPR001876 -
Seca4g08509 147 SUPERFAMILY Ran binding protein zinc finger-like 50 87 IPR036443 -
Seca4g08509 147 PANTHER ZINC FINGER PROTEIN 55 145 - -
Seca4g08509 147 ProSitePatterns Zinc finger RanBP2-type signature. 61 82 IPR001876 -
Seca4g08509 147 ProSiteProfiles Zinc finger RanBP2 type profile. 115 146 IPR001876 -
Seca4g08509 147 FunFam Ran-binding zinc finger protein 107 146 - -
Seca4g08509 147 Gene3D - 111 146 - -
Seca4g08509 147 Gene3D - 53 88 - -
Seca4g08509 147 Gene3D - 2 32 - -
Seca4g08509 147 SUPERFAMILY Ran binding protein zinc finger-like 108 145 IPR036443 -
Seca4g08509 147 ProSitePatterns Zinc finger RanBP2-type signature. 119 140 IPR001876 -
Seca4g08509 147 ProSiteProfiles Zinc finger RanBP2 type profile. 57 88 IPR001876 -
Seca4g08509 147 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Seca4g08509 147 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Seca4g08509 147 SMART zf_4 117 143 IPR001876 -
Seca4g08509 147 SMART zf_4 5 29 IPR001876 -
Seca4g08509 147 SMART zf_4 59 85 IPR001876 -
Seca4g08509 147 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08509 Seca-Chr4 202805699 202806500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08509 - - gmx:100527535 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08509 4 202805699 202806500 Seca4g08509 4 202805699 202806500 ECH