Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08423 ATGGTTCTCGCACAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAAATGAGCAATGCGACGGTGATCGATGAGAAGGTCCTCAACGATTGCCTCAACGAGATCACTCGAGCACTTCTTCAATCCGATGTTCAATTCAAGCTCGTCCGTGACATGCAGACCAACATCAAGAAGATTGTCAACCTCGACGATCTCGCTGCTGGTCACAACAAACGCAAGATCATCCAACAAGCTGTGTTTAACGAACTCTGCAAAATGCTGGATCCTGGGAAGCCCTCTTTCGCTCCCAAAAAAGGGAAAGCAAGTGTCGTAATGTTTGTCGGTTTACAAGGGTCTGGAAAAACCACAACATGTACAAAATATGCATATTATCATCAGAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCAGATACATTCAGGGCTGGTGCATTTGACCAATTGAAGCAAAATGCCACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCCGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGCGATCTTATAATTGTTGATACCAGTGGACGACACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTGCAGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCAAAGGGTGGTGGTGCTCTTAGTGCTGTTGCAGCGACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTTAGTCGTCTATTAGGCATGGGTGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGCGCATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTGTTTTCTATGCTTCCGGGATTTAGTGCTGAATTAATGCCAAAAGGTCGTGAAAAAGAAAGCCAGGCAAAAATTAAACGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGTATCATGCGAATAGCTCGAGGTTCTGGTCGTCTAGTTAGGGAAGTGATGGAGATGTTGGAAGAATACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAGGGTGAAATGAGTGCCCTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTCCCTCCACAGATGCTGAAGCAAATTGGTGGCATGGGTGGGTTACAAAATTTGATGAAGCAGATGGGATCTGCTAAAGATATGATGGGAATGTTTGGTGGCGGTGATTAG 1485 0.4323 MVLAQLGGSISRALQQMSNATVIDEKVLNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAVFNELCKMLDPGKPSFAPKKGKASVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRIMRIARGSGRLVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMFGGGD. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08423 494 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Seca4g08423 494 FunFam Signal recognition particle GTPase 5 97 - -
Seca4g08423 494 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Seca4g08423 494 Gene3D - 91 285 IPR027417 -
Seca4g08423 494 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Seca4g08423 494 SMART AAA_5 100 277 IPR003593 GO:0016887
Seca4g08423 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Seca4g08423 494 CDD SRP54_G 102 294 - -
Seca4g08423 494 Gene3D - 5 306 IPR042101 -
Seca4g08423 494 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 484 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Seca4g08423 494 FunFam Signal recognition particle 54 kDa subunit 90 285 - -
Seca4g08423 494 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Seca4g08423 494 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Seca4g08423 494 NCBIfam signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Seca4g08423 494 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Seca4g08423 494 Gene3D - 311 452 IPR036891 GO:0006614|GO:0008312|GO:0048500
Seca4g08423 494 FunFam Signal recognition particle 54 kDa protein 311 451 - -
Seca4g08423 494 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 93 IPR036225 -
Seca4g08423 494 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Seca4g08423 494 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08423 Seca-Chr4 200941047 200947946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08423 K03106 - rcu:8282364 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08423 4 200941047 200947946 Seca4g08423 4 200941047 200947946 ECH
Seca4g12034 4 261146991 261151473 Seca4g08423 4 200941047 200947946 PCT