Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08397 ATGAGTCAACAAATTTTTAACAAATTGGTTTACTCCAGTCGTCTTACACTTGCTTCATTCCAAGCTTTTCGTGATTTTGCCCTCCAGGATCTTTACTTGGGAAAGTATGCTGGTGCTGCCGTCAATGATGCTTGGATGGATGTCATCTCATCACAGGGGTCATCTTTACTTCATGTGGATCTTTCTGGCTCTGATGTCACTGATCATGGCCTTGCCTATCTTAGAGATTGTGAAAATATCATTTCTTTAAATCTTAATCACTCTCACCAAATTTCTGATCGTGGACTGGAGTATATCACTGGTCTCTCAAACTTGGCAATTTTGAGTTTTAGAAGAAATGATGCAATTTCTGCTCACGGATTAAGTACCTTTTCTCGTCTTGCTAACTTGGTCAAATTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTTCATTTTCGAGGCTTAACCAAGTTGGAATCTCTCAATATGAAGTGGTGTAATTGCATAACAGATGATGATATGAAGCCTTTGTCAGAGCTTAAAAATTTGAAAAGACTGGAGATTTCCTGCAGTAGAGTCACAGATTTTGGCATCAGTTTTCTAAAAGGATTACAAAAGCTTGCTTTGTTAAATTTGGAAGGGTGCCTTGCAACAGCTGAATGCTTGGATTCTCTTGCAGAGCTTCCTGCCCTGTCAAACTTGAATCTTAGTAGATGTAATCTTTCCAACAGTGGATGTGAAAAATTTTCGCGTCTGGAAAATCTGAATGTATTAAACTTGGGATTTAATGACATAACAGATGCATGTTTAGAACACTTGAAAGGATTGACAAAATTGAAGAGCTTGAACTTGGATTCATGCAGGATCGATGGTGATGGATTGATCCACTTGGCAGGCCATCAGCACCTGAGTTGCTTGGAACTCTCTGATACGGATGTTGGAAGCAATGGTTTACAGCATTTGTCAGGATTGTCTAGTCTGGAGAAAATAAATCTGTCATTCACTATGGTTAATGATAATGGTTTAAGGAAACTATGTGGACTCTCATCTCTCAAGTCACTAAATTTGGATGCTCCCCAAATTACTGATACTGGGCTGGCCAACCTAACAAGTTTGACTGGGCTTACTGACCTGGATTTGTTTGGTGCGCGTATCACAGATTTTGGAACAAACTATTTTAAAAGTATGAAATATTGTACTAATAGTAGTTTCATACAATTATCCCAAGTGATTTTGGTTTCACGTGACTGGAGGCTGAAATATGGTTATATGTGGTGGTGGATATATATAAGCTTAGTTTGGTTTTATGTTGTAACAGTGCAAAACCAGATTACAAAAAAATTGAAACCAAATCACTTCCATTAA 1353 0.3836 MSQQIFNKLVYSSRLTLASFQAFRDFALQDLYLGKYAGAAVNDAWMDVISSQGSSLLHVDLSGSDVTDHGLAYLRDCENIISLNLNHSHQISDRGLEYITGLSNLAILSFRRNDAISAHGLSTFSRLANLVKLDLERCPGIHGGLVHFRGLTKLESLNMKWCNCITDDDMKPLSELKNLKRLEISCSRVTDFGISFLKGLQKLALLNLEGCLATAECLDSLAELPALSNLNLSRCNLSNSGCEKFSRLENLNVLNLGFNDITDACLEHLKGLTKLKSLNLDSCRIDGDGLIHLAGHQHLSCLELSDTDVGSNGLQHLSGLSSLEKINLSFTMVNDNGLRKLCGLSSLKSLNLDAPQITDTGLANLTSLTGLTDLDLFGARITDFGTNYFKSMKYCTNSSFIQLSQVILVSRDWRLKYGYMWWWIYISLVWFYVVTVQNQITKKLKPNHFH. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08397 450 Gene3D Ribonuclease Inhibitor 220 293 IPR032675 -
Seca4g08397 450 Pfam Leucine Rich repeat 152 174 IPR001611 GO:0005515
Seca4g08397 450 Pfam Leucine Rich repeat 296 318 IPR001611 GO:0005515
Seca4g08397 450 Gene3D Ribonuclease Inhibitor 36 143 IPR032675 -
Seca4g08397 450 Gene3D Ribonuclease Inhibitor 294 396 IPR032675 -
Seca4g08397 450 Gene3D Ribonuclease Inhibitor 144 219 IPR032675 -
Seca4g08397 450 PANTHER UNCHARACTERIZED 27 173 - -
Seca4g08397 450 FunFam Leucine-rich repeat family protein 143 221 - -
Seca4g08397 450 FunFam Predicted protein 41 142 - -
Seca4g08397 450 SMART LRR_CC_2 151 176 IPR006553 -
Seca4g08397 450 SMART LRR_CC_2 224 248 IPR006553 -
Seca4g08397 450 SMART LRR_CC_2 177 206 IPR006553 -
Seca4g08397 450 SMART LRR_CC_2 77 102 IPR006553 -
Seca4g08397 450 SMART LRR_CC_2 344 368 IPR006553 -
Seca4g08397 450 SMART LRR_CC_2 272 296 IPR006553 -
Seca4g08397 450 Pfam Leucine rich repeat 225 285 IPR001611 GO:0005515
Seca4g08397 450 SUPERFAMILY RNI-like 49 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08397 Seca-Chr4 199364284 199374152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08397 200 352 Receptor kinase-like Gene Family AT1G75820 29.221 1.65e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08397 - - gmx:100790802 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08397 4 199364284 199374152 Seca4g08397 4 199364284 199374152 ECH