Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08387 ATGGATACCAATAATTGGAGACCTAATCAAGGCACTGAACCCAATATGGATACTAGTGATTGGAGAGGTCAACTGCAGTCTGATTCACGCCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAGACATCTTCCCGTTTCTGGTCAAGAGGGATTGCATGAACTTCGGAAAATTGCTCAAAGGTTTGAAGAGAAGATTTTTACTGCTGCAACTAGCCAGTCTGATTATCTACGCAAAATATCTTTGAAGATGCTTACGATGGAGACTAAATCCCAGGGCACCATGGCCAACAATATTCCATCAAATCAAGTTGGCCCTAGCAATAAACCTCCTGATCCAGGACTTGTAATGCAGCCTCAAGTTCACAATCCAGGGCAGCAACATCCTATTCCTTTGCCTAACCAGCCCCAGTCACGTCAGCAGCTTCTATCTCAGAACATTCAAAATAATATTGCATCTCAACCTAACTTGCCACCTGTATCAAGTCTAGCCCAGACTCCCATCCAAAATGTTGGCCAGAATTCCAACATACAGAATATACCTGGACAGAATTCAGTGGGGAGCACTATTGGCCAGAATTCCAACATGCAAAATATTTTTGCTGGTTCCCAGAGACAAATGCAAGGAAGGCAGCAGGTTGTTCCCCAACAGCAGCAGCAGCAATCACAGAATCCACAACAATATCTGTACCAACAGCAGCTTATGAGGCATAAGCTCCAACTGCAATCTCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGAACCTTCTACAACCCAATCAGTTGCAGTCTTCTCAGCAATCTGTCATGCAAACATCATCGGTTATGCAGCAGCCTTCTATGATGCAAACATCTTCTCTATCTAGCATTCAACACAATCAACAATCTAATAATGTTCAACAGTCAACACAGTCCATGCTTCAGCAACACCCCCAAGTTATCAGGCAACAGCAGCAGCAGACTTCTATAATTCATCAGCAACAAACACCAATGACTCAACAGTCCATATTGCCTCCACAACAGCAGCAGCAGCAACAGCTTATGGGGCCACAGGGAAATGCAACAAACATGCAACATGGCCAGATGCTTGGGCCACAGAATAATGTTGGTGATTTGCAGCAATCACAGAGGTTACTTGCACAGCAGAATAATCTTTCAAACCTGCAACAGCAACAGTTAATAAATCAGCAAAACAACCTATCAAATATACATCAACAGTTAGGAAATAATGTCTCTGGGTTACAGCCGCAACAGGTCCTTGGACCTCAATCTGGCAACTCAGGCATGCAAACAAGCCAGCACTCTGCACACATGCTACAACAATCTAAGGTTCCAATTCAGCAACAAACACAGCAAAATGCATCAAATTTGTTACCATCTCAAGCACAGCAGTCGCAACCACAGGCTCCTCAGCAGCAATTGATGCCACAGATTCAATCTCAGCCTGCACAATTACAACAGCAATTGGGTTTGCAACAGCAGCCAAATCCCTTGCAACGAGATATGCAGCAAAGGCTTCAGGCATCAGGTTCCTTACTTCAACAACCAAGTGTTCTTGATCAACAGAAGCAGTTATATCAATCACAAAGGCCCCTTCCAGAAACTTCATCAACTTCTCTCGATTCAACAGCACAGACTAGACAACCAAGTGGGGGTGATTGGCAAGAAGAAGTGTATCAGAAGATCAAAACCATGAAAGAAAATTACTTGCCAGAGTTGAATGAAATGTATCAGAAAATTGCTACTAAACTTCAGCAGCACGATTCCCTTCCCCAACAACCAAAGTCGGATCAGCTTGAGAAGCTTAAGGTGTTTAAAATGATGTTGGAGCGTATTATAACATTCCTCCAGGTTTCCAAGAGCAACATTTCACCTAATTTCAAAGAGAAACTGGGTTCATATGAGAAGCAGATCATAAATTTCATAAATACAAATAGACCTAGGAAAGCCATGTCTTCCCTGCAGCAAGGACAGCTTCCTCCACCTCATATGCAATCCATGCCACAGTCACAACCCCAAGTTACTCAAGTGCAGTCTCATGAAAATCAAATGAACTCTCAGTTGCAAACAACAAATATACAAGGCTCTGTAACAGCAATGCAACAGAATAATATGACAAACATGCAGCATAATTCTCTGCCTGGTGTATCTACAGCACCGCAGAATATGATGAATTCGATGCAACCTAATACCAATTTAGATTCAGGACAAGGAAATGCTATGAATTCTCTGCAACAGGTTCCAGTGAGCTCCCTTCAACAAAACCCTGTTACTGCTCCTCAACAAAGTAATGTTAACTCCTTAACTTCACAAGCTGGGGTAAATGTGATACAACCAAATCTTAATCCTCTTCAGTCAGGTTCTAGTATGCTTCAACACCAGCAACTTAAACAACAGCAGGAACAACAGATGTTGCAGAGTCAACAACTCAAACAACAATATCAGCGACAATTAATGCAGAGGCAGCAGATGCTACACCAGCAGCAGCAGCAGTTACACCAGCCAGCAAAGCAACAGCTTCCTGCACAATTGCAGACACATCAAATGCAACAACTTCACCAAATGAATGATGTAAATGACATAAAGATGAGGCAAGGAATTGGTGTTAAGCAAGGGGTCTTTCAGCAACATCTTAATTCCAGTCAACGCTCAGCTTATCCCCATCAACATCAACAGTTGAAACAAGGGAGTCCTTTTCATGTTTCTTCACCGCAACTCCTCCAGGCTACATCTCCTCAAATTCCACAACACTCATCTCCTCAGGTTGACCAACAAAATCACCTCCCATCTCTCACAAAAGTTGCTACCCCTCTGCAATCTGCTAACTCACCTTTTGTAGTCCCCACTCCTTCTCCTCCCTTGGCTCCATCTCCTATGCCTGGAGATTCTGAAAAGCCTCTTTCTGGTGTTTCATCGATATCAAATGCTGCAAATATTGGACATCAACAAACAGGGGGTTCAGCAGCACCTGCTCAATCCCTTGCCATTGGAACTCCTGGAATATCAGCCTCTCCTTTACTAGCAGAGTTCACTGGTCAAGATGGTGCTCACAGTAATGCTTTAGCACCCCCTTCAGGAAAGTCAACTGTTACTGAGCAGCCTCTTGAGCGCCTAATTAAAGCGGTGAAATCATTGACCCCTAAAGCTTTAAGTGCCGCAGTGGGTGATATTGGTTCAGTTGTTAGCATGAATGATAGGATAGCAGGGTCAGCTCCGGGTAATGGATCCAGAGCTGCTGTTGGCGAAGATTTGGTTGCCATGACTAATTGTCGGCTTCAGGCTAGAAATTTCATCACCCAAGATGGTGCCAATGGAACCAGGAGGATGAAACGCTGCACTAACGCTACACCCTTGAATGTTGTATCATCTGCTGGTAGCATGAATGATAGTGTCAAGCAGTTAACTGCTTTTGAAGCTTCTGATTTGGAGTCAACTGCAACATCTAGTATCAAGAAGCCAAGGATTGAGGCTAATCATGCTCTTTTGGAAGAAATTAGGGAGGTTAATCAGAGACTTATTGACACAGTTGTTGGCATAAGTGATGAAGAAGTTGATCCAACTGCAGCTGCTGCTGCTGCTGAAGGGGCAGAAGGGACCATTGTCAAATGTTCTTTTAATGCCGTGGCTCTTAGTCCAAGCTTAAAATCCCAATATGCTTCAGCACAGATGTCACCAATTCAACCCCTGCGGTTGCTTGTTCCTACAAATTATCCTAATTGTTCTCCCATACTCCTTGACAAATTTCCAGTTGAATCCAGTAAGGAGAATGAAGATCTTTCCGCGAAAGCAAAGTCAAGGTTTAGCATATCCTTGCGAAGTTTATCACAACCTATGTCCCTTGGGGAGATTGCAAGGACTTGGGATGTTTGTGCTCGAACAGTTATTTCTGAACATGCACAACAGAGCGGTGGAGGGAGTTTCAGCTCTAAGTATGGGACTTGGGAGAATTGCTTGACCACATGA 3999 0.4366 MDTNNWRPNQGTEPNMDTSDWRGQLQSDSRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGTMANNIPSNQVGPSNKPPDPGLVMQPQVHNPGQQHPIPLPNQPQSRQQLLSQNIQNNIASQPNLPPVSSLAQTPIQNVGQNSNIQNIPGQNSVGSTIGQNSNMQNIFAGSQRQMQGRQQVVPQQQQQQSQNPQQYLYQQQLMRHKLQLQSQQQQQQQQQQQQQQQQQQQQQQNLLQPNQLQSSQQSVMQTSSVMQQPSMMQTSSLSSIQHNQQSNNVQQSTQSMLQQHPQVIRQQQQQTSIIHQQQTPMTQQSILPPQQQQQQQLMGPQGNATNMQHGQMLGPQNNVGDLQQSQRLLAQQNNLSNLQQQQLINQQNNLSNIHQQLGNNVSGLQPQQVLGPQSGNSGMQTSQHSAHMLQQSKVPIQQQTQQNASNLLPSQAQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDMQQRLQASGSLLQQPSVLDQQKQLYQSQRPLPETSSTSLDSTAQTRQPSGGDWQEEVYQKIKTMKENYLPELNEMYQKIATKLQQHDSLPQQPKSDQLEKLKVFKMMLERIITFLQVSKSNISPNFKEKLGSYEKQIINFINTNRPRKAMSSLQQGQLPPPHMQSMPQSQPQVTQVQSHENQMNSQLQTTNIQGSVTAMQQNNMTNMQHNSLPGVSTAPQNMMNSMQPNTNLDSGQGNAMNSLQQVPVSSLQQNPVTAPQQSNVNSLTSQAGVNVIQPNLNPLQSGSSMLQHQQLKQQQEQQMLQSQQLKQQYQRQLMQRQQMLHQQQQQLHQPAKQQLPAQLQTHQMQQLHQMNDVNDIKMRQGIGVKQGVFQQHLNSSQRSAYPHQHQQLKQGSPFHVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPLSGVSSISNAANIGHQQTGGSAAPAQSLAIGTPGISASPLLAEFTGQDGAHSNALAPPSGKSTVTEQPLERLIKAVKSLTPKALSAAVGDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRCTNATPLNVVSSAGSMNDSVKQLTAFEASDLESTATSSIKKPRIEANHALLEEIREVNQRLIDTVVGISDEEVDPTAAAAAAEGAEGTIVKCSFNAVALSPSLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVESSKENEDLSAKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEHAQQSGGGSFSSKYGTWENCLTT. 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08387 1332 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 891 1322 IPR044661 GO:0003713|GO:0031490
Seca4g08387 1332 MobiDBLite consensus disorder prediction 95 142 - -
Seca4g08387 1332 FunFam Mediator of RNA polymerase II transcription subunit 15a 20 98 - -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 537 566 - -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 958 972 - -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 268 323 - -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 173 226 - -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 661 681 - -
Seca4g08387 1332 Coils Coil 805 843 - -
Seca4g08387 1332 Gene3D Coactivator CBP, KIX domain 20 99 IPR036529 GO:0003712|GO:0006355
Seca4g08387 1332 MobiDBLite consensus disorder prediction 121 142 - -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 537 565 - -
Seca4g08387 1332 Coils Coil 235 267 - -
Seca4g08387 1332 SUPERFAMILY Kix domain of CBP (creb binding protein) 18 92 IPR036529 GO:0003712|GO:0006355
Seca4g08387 1332 MobiDBLite consensus disorder prediction 952 981 - -
Seca4g08387 1332 Pfam KIX domain 19 98 IPR036546 -
Seca4g08387 1332 MobiDBLite consensus disorder prediction 425 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08387 Seca-Chr4 199078338 199090378 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08387 K14972 - gmx:100783762 1745.71