Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08343 ATGGAGGTGCCTTCTTCATGGGATTCCCTTCGCAAACAGGCAAGAAAACTTGAAGCTCAGTTGGATGAGCAAATGAATTCATATCGAAAATTGGTTTCAACAAAAATTTCTACAAAAGCTGATGCAGCAGAGAGTGATCTGGAGTCTTGGATTGAGCGATTACTAAACCAACTCAAACAAGTAAACTCACAGATGCAAGCTTGGGTGTCCTCTGGTGGGTCAGAAATGGTTTCTCATACACTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGTCTTCGGTCTAGTCTTAGAGCTAAGCAAGAGCATGCTTCACTACTCGATGATTTTAAAGAGTTTGATCGGTCAAGATTAGATTTGGAAGAGGGTGCAGGTTCTGAACAGCAAACCCTCCTGAAAGAGTATGCATCTATCAGCCGAAGTACAGGACAGATGGACACTGTTATTTCACAAGCACAAGCAACTCTTGGTGCACTAGTCTTCCAGCGTTCAACTTTTGGTGGAATCAATTCAAAGCTCGGCAACGTGAGCAGTCGCCTCCCAACGGTAAATAACATTCTGTCAGCAATAAAGCGAAAAAAGTCGATGGATACCATTATACTTTCCCTTGTTGGGTCCATATGCATATTTCTTATTTTCATCTATTGGCTAACCAAGTAA 675 0.4193 MEVPSSWDSLRKQARKLEAQLDEQMNSYRKLVSTKISTKADAAESDLESWIERLLNQLKQVNSQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLRAKQEHASLLDDFKEFDRSRLDLEEGAGSEQQTLLKEYASISRSTGQMDTVISQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNNILSAIKRKKSMDTIILSLVGSICIFLIFIYWLTK. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08343 224 Coils Coil 7 34 - -
Seca4g08343 224 PANTHER GOS-28 SNARE- RELATED 4 222 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016020
Seca4g08343 224 PIRSF Golgi_SNARE 1 223 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016020
Seca4g08343 224 Coils Coil 51 71 - -
Seca4g08343 224 Pfam Snare region anchored in the vesicle membrane C-terminus 135 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08343 Seca-Chr4 198233058 198237851 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08343 K08495 - gmx:100797885 381.719