Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08192 ATGGCGAACAGAAACTTGGAAAAGATGGCATCCATTGATGCTCAGCTTCGGCTGTTGGTTCCAGCCAAAGTGAGTGAGGATGATAAACTGGTTGAGTATGATGCTCTGCTCCTGGATCGATTCCTTGATATTCTCCAGGATTTGCATGGAGAGGATCTGAAGGAAACGGTTCAAGAAGTGTATGAGCTTTCTGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTAGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCTATTGTTGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCAAACTTAGCTGAAGAAGTCCAGATTGCTCACCGCAGAAGGAACAAATTGAAGAAAGGGGATTTTGCTGATGAGAGCAATGCAACCACTGAATCAGATATTGAAGAAACTCTCAAGAAACTTGTAGGGGAAATGAAGAAGTCCCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACTGTTGACCTGGTTCTTACTGCTCATCCTACTCAATCAGTTCGTAGATCTTTGCTTCAAAAGCATGGAAGGATACGAAATTGTTTAACTCAATTGTATGCTAAAGACATCACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTGCAAAGGGAGATCCAAGCTGCTTTCCGTACTGATGAAATCAGGAGAACCCCTCCAACCCCACAAGATGAGATGAGGGCAGGGATGAGTTACTTCCATGAAACAATTTGGAAGGGTGTTCCCAAATTTCTGAGACGTGTTGATACAGCTTTGAAGAATATAGGGATTAATGAACGTGTCCCATATAATGCTCCACTTATTCAGTTTTCATCTTGGATGGGTGGTGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAGGATCTTATGTTTGAATTGTCAATGTGGCGCTGCAATGATGAGCTACGTGTCCGAGCAGATGAACTTAACAGGTCTTCCAAGAAAGATGCAGTTGCAAAACACTACATAGAGTTTTGGAAAATCATTCCTCCAAGTGAGCCATATCGTGTGGTATTGGGTGAAGTAAGGGATAGGCTCTACCAGACTCGTGAGCGTTCTCGCCATTTGCTAGCTCATGGCTACTCTGACATTCCAGAGGAAGAAACTTTCACCAATTTGGAGGAGTTCTTGGAACCTCTTGAACTCTGTTATAGATCACTCTGTGCCTGTGGTGATCGAGCAATTGCTGATGGAACCCTTCTAGATTTCTTGAGACAAGTCTCCACTTTTGGTCTGTCACTAGTGAGGCTTGATATAAGGCAAGAATCAGACCGTCACACAGATGTGTTGGATGCCATTACCAAACACTTGGAAATTGGTTCCTACCAGGAATGGTCTGAAGAAAAAAGGCAGCAATGGCTTTTGTCTGAATTGAGTGGCAAACGCCCTCTATTCGGACCTGACCTTCCCCAAACTGAAGAAATCAGAGATGTTTTGGACACCTTCCATGTCATAGCAGAATTACCACCAGACAATTTCGGAGCATACATCATATCAATGGCAACTGCACCATCTGATGTGCTTGCAGTTGAACTTCTCCAACGTGAATGCCATGTCAAGCATCCATTGAGAGTGGTTCCATTGTTTGAGAAGCTTGCTGATCTTGAGGCAGCTCCTGCTGCATTGGCTCGGTTGTTCTCAATAGACTGGTACAGAAACCGGATCAATGGGAAACAAGAAGTGATGATTGGTTATTCTGATTCAGGTAAAGATGCTGGAAGATTCTCTGCAGCATGGCAATTATATAAGGCTCAAGAGGAACTTATAAAGGTGGCTAAAGAATTTGGTGTCAAGCTAACTATGTTCCATGGTCGTGGAGGGACTGTTGGGAGAGGAGGTGGTCCTACTCATCTTGCTATCCTTTCTCAGCCTCCAGATACAATCCATGGATCACTTCGTGTAACTGTCCAAGGTGAAGTTATTGAGCAGTCATTTGGAGAAGAGCACTTGTGTTTCAGAACACTTCAGCGTTTCACTGCTGCTACTCTTGAACATGGGATGCATCCACCAAATTCTCCTAAACCTGAATGGCGTGCTTTGATGGATGAAATGGCTGTCATTGCCACAGAGGAATACCGTTCTATTGTCTTCAAAGAACCCCGTTTTGTTGAATATTTCAGACTGGTAAGAAGATATCTATGA 2238 0.4348 MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFADESNATTESDIEETLKKLVGEMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELNRSSKKDAVAKHYIEFWKIIPPSEPYRVVLGEVRDRLYQTRERSRHLLAHGYSDIPEEETFTNLEEFLEPLELCYRSLCACGDRAIADGTLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPNSPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLVRRYL. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08192 745 FunFam Phosphoenolpyruvate carboxylase 1 308 445 - -
Seca4g08192 745 Pfam Phosphoenolpyruvate carboxylase 36 740 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g08192 745 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 740 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g08192 745 Coils Coil 742 745 - -
Seca4g08192 745 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 740 IPR015813 GO:0003824
Seca4g08192 745 Coils Coil 104 124 - -
Seca4g08192 745 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Seca4g08192 745 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Seca4g08192 745 Gene3D Phosphoenolpyruvate/pyruvate domain 308 445 - -
Seca4g08192 745 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g08192 745 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g08192 745 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g08192 745 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g08192 745 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca4g08192 745 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08192 Seca-Chr4 194361667 194368164 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08192 K01595 - gmx:100820574 1413.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08192 4 194361667 194368164 Seca4g04784 4 88988092 88995452 PCT