Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08129 ATGATTTCTAATTCAATTATGCATTGCTTCTTCCAGATTAGGTTTCTGACAAAAATATATCATCCCAACATTGACAAGCTTGGCAGAATATGCCTTGATATCCTGAAAGATAAGTGGAGTCCTGCCCTTCAGATTCGTACTGTACTCTTGAGTATTCAAGCTCTTTTAAGTGCACTGAACCCAGATGATCCACTTTCTGAGAACATTGCTAAGCATTGGAAGACTAACGAGGCTGAGGCTATTGAAACAGGTAGGAAACAAATGCACAACTGCATGTCTGATTCTAAAAAATATCCTTATTTTATTGAGACAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGGATATCTCAGAGATGCTGTGTTCGTACCTTCACAAAGCTGGAATGGCCTGTCCGGACAATTAGTTTCAATTATACTGGGGATCTTATTGCCTCAGCAAGTGAGGACTTGTTCATTGATATTTGTGCTGCTGTAGATGACCACATCTTCGGAGTTCTGTAG 516 0.4031 MISNSIMHCFFQIRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSALNPDDPLSENIAKHWKTNEAEAIETGRKQMHNCMSDSKKYPYFIETDILLLEVLIPLSACGISQRCCVRTFTKLEWPVRTISFNYTGDLIASASEDLFIDICAAVDDHIFGVL. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08129 171 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 20 35 IPR023313 -
Seca4g08129 171 Gene3D Ubiquitin Conjugating Enzyme 10 103 IPR016135 -
Seca4g08129 171 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 12 80 - -
Seca4g08129 171 SMART ubc_7 4 93 - -
Seca4g08129 171 Pfam Ubiquitin-conjugating enzyme 12 80 IPR000608 -
Seca4g08129 171 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 93 IPR000608 -
Seca4g08129 171 CDD UBCc 12 88 IPR000608 -
Seca4g08129 171 SUPERFAMILY UBC-like 13 94 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08129 Seca-Chr4 191774057 191776121 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08129 K10580 - csin:114303613 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08129 4 191774057 191776121 Seca4g08129 4 191774057 191776121 ECH