Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g06917 | ATGGTTGCGAGGTTATCAACCAAAGTTCTGAACATATGCATATCCTCAATGTGCAAGGCGAAGCAACTGGTAAAAGCGGAAGGGGTGTTAATAGACGGCATAAAATTAGGTGTGCTCCCTGACGTCGTCACCTACAACACATTAATCGATGCGTATTGTCGTTTTGTCAGCATTGACGCGGCCTACTCCGTTCTCCATAGAATGAGAGAAGCAGGAATAAACCCTGACGTGATTTCCTACAACTCATTAATCTCCGGTACCGTCAGAAAGTGCCTCTTGTCAAGGTCCCTAAACCTGTTCGAAGAAATGCTCGCATCAGGGATACGCCCCGACGTGTGGAGCTACAACATTCTAATGCACTGTTTGTTCAGAATGGGAAAACCCGACGAGGCGAATCGCGTTTTCAAGGACATAGTGTTTAGCGGCGAGCTATATCCGACTCACGCAACTTACAACGTCATGATTAACGGGTTATGTAAAAACGGTCACGTGCACAACGCTCTTATGTTATTCAGGAACTTGCAGCGCCACGGGTTTGCTCCTCAGGTTCTGACTTATAACGTGCTGATTAACGGACTCTGCAAAGCGAAGAGATTAGCGGATGCGAGGAGGGTTCTTAGGGAGTTTTGCGAATCTGGATATGAACCGAATGCTATTACTTACACGACGGTTATGAAGTGCTGCTTCAGGTGCGGGCGGTTAGAGCAAGGGCTTGAGATTTTATCGGAGATGAGGAACAAAGGTTACACGTTCGATGGCTTCGCTTACTGCACTGTGACTGCTGCGTTGATAAAGACTGGAAGGATTCAAGAGGCTGAGGAAATTGTGGAGCAGATGATGAACAATGGCGTGAAGCCAGATCTAGCATCTTACAACACAATGATAAATCTTTACTGCAAGCAAGGGAGATTGGAAGAAGCATTGAATTTGTTGGATGAGATAGAGAAAGAAGGACTGAAATGTGATCAGTACACGCACACGATTATAATCCATGGATTATGTAAGGTTGGCAATTTTGCTGGGGCTCAGCAGCACTTGAATTACATGAATACGTTGGGATTTGGTTTTAATTTGGTGGCTTTTAACTGTGTGCTTGATGGTTTGGGTAAAGCTGGTCATATTGATCATGCAGTGAAGTTGTTTGAAGCAATGGAGGTTAAAAACTCTTTCACTTATACCATCTTGGTGCATAACCTTTGTAGGGCTAGGAGGTTCCTCTGTGCATCCAAGCTTTTGGTTTCTTGTTTAAAATGTGGCTTTCAGGTCTTAAGGGCCACTCAGCGAGCTGTTATTGATGGTCTCCGTAGTATTGGGTATACAAATGAAGCAAAGAAAGTTAAGGCGAAAATCCGGATTGGTCGATTGTTGCATTGA | 1374 | 0.4454 | MVARLSTKVLNICISSMCKAKQLVKAEGVLIDGIKLGVLPDVVTYNTLIDAYCRFVSIDAAYSVLHRMREAGINPDVISYNSLISGTVRKCLLSRSLNLFEEMLASGIRPDVWSYNILMHCLFRMGKPDEANRVFKDIVFSGELYPTHATYNVMINGLCKNGHVHNALMLFRNLQRHGFAPQVLTYNVLINGLCKAKRLADARRVLREFCESGYEPNAITYTTVMKCCFRCGRLEQGLEILSEMRNKGYTFDGFAYCTVTAALIKTGRIQEAEEIVEQMMNNGVKPDLASYNTMINLYCKQGRLEEALNLLDEIEKEGLKCDQYTHTIIIHGLCKVGNFAGAQQHLNYMNTLGFGFNLVAFNCVLDGLGKAGHIDHAVKLFEAMEVKNSFTYTILVHNLCRARRFLCASKLLVSCLKCGFQVLRATQRAVIDGLRSIGYTNEAKKVKAKIRIGRLLH. | 458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | IPR002885 | - | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 217 | 251 | IPR002885 | - | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 147 | 181 | IPR002885 | - | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 41 | 75 | IPR002885 | - | |
| Seca4g06917 | 457 | SUPERFAMILY | TPR-like | 112 | 312 | IPR011990 | GO:0005515 | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 182 | 216 | IPR002885 | - | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 76 | 110 | IPR002885 | - | |
| Seca4g06917 | 457 | Gene3D | Tetratricopeptide repeat domain | 142 | 253 | IPR011990 | GO:0005515 | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 252 | 286 | IPR002885 | - | |
| Seca4g06917 | 457 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 89 | 346 | - | - | |
| Seca4g06917 | 457 | Pfam | PPR repeat | 255 | 284 | IPR002885 | - | |
| Seca4g06917 | 457 | Pfam | PPR repeat | 11 | 37 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 290 | 322 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 185 | 218 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 114 | 142 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 255 | 287 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 78 | 112 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 219 | 250 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 359 | 386 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 150 | 181 | IPR002885 | - | |
| Seca4g06917 | 457 | NCBIfam | pentatricopeptide repeat | 43 | 77 | IPR002885 | - | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 111 | 145 | IPR002885 | - | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | IPR002885 | - | |
| Seca4g06917 | 457 | Gene3D | Tetratricopeptide repeat domain | 3 | 141 | IPR011990 | GO:0005515 | |
| Seca4g06917 | 457 | Pfam | PPR repeat family | 286 | 335 | IPR002885 | - | |
| Seca4g06917 | 457 | Pfam | PPR repeat family | 40 | 87 | IPR002885 | - | |
| Seca4g06917 | 457 | Pfam | PPR repeat family | 147 | 195 | IPR002885 | - | |
| Seca4g06917 | 457 | Pfam | PPR repeat family | 357 | 401 | IPR002885 | - | |
| Seca4g06917 | 457 | Pfam | PPR repeat | 213 | 245 | IPR002885 | - | |
| Seca4g06917 | 457 | Pfam | PPR repeat | 107 | 137 | IPR002885 | - | |
| Seca4g06917 | 457 | Gene3D | Tetratricopeptide repeat domain | 385 | 451 | IPR011990 | GO:0005515 | |
| Seca4g06917 | 457 | Gene3D | Tetratricopeptide repeat domain | 267 | 370 | IPR011990 | GO:0005515 | |
| Seca4g06917 | 457 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 287 | 321 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g06917 | Seca-Chr4 | 145908628 | 145910250 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g06917 | 11 | 451 | Glycosyltransferase | AT1G05670 | 29.438 | 1.98e-60 | 208 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g06917 | - | - | gmx:100808229 | 718.768 |