Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06139 ATGGCTGCTGCCACTAACTTTGGAACTGTATGGTGTCTAAGAAGAGCAGCTCAGGCTTTTGCATTCTCTCATTCTCATATTCTCCGCAGCAATGTCAACCTCTCTTTCCAAAGGACCCTTACCTCTCATCTTCTCTCCAATTCTACTTCTTCAGCTTCAGGTGTAAGCCAGACAGTACAAGCTTTAAAAGGAGAAGTTGATGAGTTACTCAAGGGAGTCGGAGAAAAAAGTGTAGCAAAAGAAGTGAAGCATATTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGAGATTCTCCATACAGATTTTCTAACACCTCCAGTGCTGAAGGAATCTATGCAAGTATTGGAAAAATTAGCAGATGTGAAATCAATTGCTCAAGGAGGTTATCCACAGGCTGAACGTTGTCGAATTTCTGTTGGACATCCAGATGAATTGACTAGTGATCCAGATATTATATCAGCATTGAGTATTACAGGGAACTTTAAGTTTGAACCTTGTTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACTGGAATTGCCAGAGAGAAACTTGGAGATATTATACTGCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAACTCGTTGAATTTCTTATGTCAGCACTGGATAAGGTTCGTAATGTTCCGGTATCATGCAGCAAGATACCATTAATCTCTCTTGATTATGAACCGCCAAGAACAAAATCATTCAAAACCATAGAAGCATCACTAAGAGTTGATGCACTGGCTAGTGCAGGATTCAAGATTTCACGTTCAAAGCTAGTTGACATGATCAGCAATGGTGATGTGCGTATCAACTGGATCCCTGTTACTACCAAAGGAACCGCACTCAAGAGTGGAGATATTGTATCAGTTAGTGGAAGGGGAAGATTGAAGATAGGAGAAATAAACTCCACCAAGAAAGGAAAGTTTGCAGTGGAGCTCATTCGGTATTTGTAG 972 0.4115 MAAATNFGTVWCLRRAAQAFAFSHSHILRSNVNLSFQRTLTSHLLSNSTSSASGVSQTVQALKGEVDELLKGVGEKSVAKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEKLADVKSIAQGGYPQAERCRISVGHPDELTSDPDIISALSITGNFKFEPCSHGDFLGSILGTGIAREKLGDIILQGEQGAQIIVVPELVEFLMSALDKVRNVPVSCSKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVDMISNGDVRINWIPVTTKGTALKSGDIVSVSGRGRLKIGEINSTKKGKFAVELIRYL. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06139 323 Pfam S4 domain 252 294 IPR002942 GO:0003723
Seca4g06139 323 Gene3D - 149 231 IPR012677 -
Seca4g06139 323 ProSiteProfiles S4 RNA-binding domain profile. 248 308 - -
Seca4g06139 323 SUPERFAMILY Alpha-L RNA-binding motif 107 311 - -
Seca4g06139 323 Gene3D - 75 142 - -
Seca4g06139 323 NCBIfam photosystem II S4 domain protein 77 321 IPR017506 -
Seca4g06139 323 Gene3D - 242 299 IPR036986 GO:0003723
Seca4g06139 323 CDD S4 249 303 - -
Seca4g06139 323 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 79 264 - -
Seca4g06139 323 SMART s4_6 248 305 IPR002942 GO:0003723
Seca4g06139 323 Pfam Putative RNA-binding domain in YlmH 154 228 IPR040591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06139 Seca-Chr4 120439481 120450043 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06139 - - gmx:100793767 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06139 4 120439481 120450043 Seca4g06139 4 120439481 120450043 ECH